Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29a07
(366 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0163 - 6056959-6058989 29 0.85
01_01_0162 - 1394980-1395760,1396024-1396037 29 1.5
01_01_0159 + 1380421-1381143 29 1.5
10_03_0021 + 7129786-7130117,7130227-7130347,7131048-7131136,713... 28 2.0
04_01_0080 - 889548-889892 28 2.0
02_04_0343 - 22166148-22166318,22166422-22166465,22166563-221666... 28 2.6
01_06_1801 - 39954425-39954533,39955289-39955578,39955786-399568... 28 2.6
09_03_0041 + 11826788-11828002,11828101-11828563,11828668-118287... 27 6.0
03_02_0914 - 12351553-12351679,12351966-12352102,12352558-123526... 26 7.9
02_05_0086 + 25703513-25703573,25703665-25703760,25703966-257040... 26 7.9
01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028 26 7.9
>03_02_0163 - 6056959-6058989
Length = 676
Score = 29.5 bits (63), Expect = 0.85
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 6/51 (11%)
Frame = +2
Query: 35 DNEKFYCIVVCCGSCRLRHRATFSNEKMPE------R*TFSSVLPSNGRAG 169
DN F ++ C +C + +A EKMP+ T+S+V+ + GRAG
Sbjct: 183 DNATFSTVISCARACGMPGKAVEWFEKMPDFGCSPDMLTYSAVIDAYGRAG 233
>01_01_0162 - 1394980-1395760,1396024-1396037
Length = 264
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Frame = +3
Query: 111 RKCPKGEHSVLY-----CPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRP 248
R+C +H +LY CP A HD H C CFC P
Sbjct: 33 RRCVAVDH-ILYAITVPCPNAAHGCAARTPYHDSHGHAAGCPHAPCFCPEP 82
>01_01_0159 + 1380421-1381143
Length = 240
Score = 28.7 bits (61), Expect = 1.5
Identities = 16/51 (31%), Positives = 19/51 (37%), Gaps = 5/51 (9%)
Frame = +3
Query: 111 RKCPKGEHSVLY-----CPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRP 248
R+C +H +LY CP A HD H C CFC P
Sbjct: 9 RRCVAVDH-ILYAITVPCPNAAHGCAARTPYHDSHGHAAGCPHAPCFCPEP 58
>10_03_0021 +
7129786-7130117,7130227-7130347,7131048-7131136,
7131375-7131459,7131609-7131771,7132861-7132937,
7133016-7133160,7133236-7133537,7133615-7133720,
7134781-7134935,7135556-7135712,7135799-7135891,
7136232-7136359,7136439-7136696,7136855-7137145,
7137235-7137318,7138335-7138468,7138557-7138784,
7139778-7139958,7140021-7140108,7140268-7140434,
7140750-7141012,7141117-7141120
Length = 1216
Score = 28.3 bits (60), Expect = 2.0
Identities = 15/42 (35%), Positives = 22/42 (52%), Gaps = 1/42 (2%)
Frame = +1
Query: 148 ALKWPSRTVRIPKSTISLTTWAHATYHSASATGLMS-GTRKL 270
A P+ +RIP S I W+ Y++ S +G M+ GT L
Sbjct: 498 AFSLPNWILRIPYSFIEAVVWSCVVYYTVSVSGNMTVGTNIL 539
>04_01_0080 - 889548-889892
Length = 114
Score = 28.3 bits (60), Expect = 2.0
Identities = 6/20 (30%), Positives = 16/20 (80%)
Frame = -1
Query: 318 IDLHNFINIQIPVHICQFSC 259
+D+H+++N+ + + +C+F C
Sbjct: 84 VDIHDYLNLALHMQLCRFGC 103
>02_04_0343 -
22166148-22166318,22166422-22166465,22166563-22166626,
22166729-22167109,22167296-22167475,22167661-22167790,
22167844-22167946,22168060-22168093,22168216-22168300,
22168389-22168453,22168592-22168690,22168960-22169025,
22169200-22169439
Length = 553
Score = 27.9 bits (59), Expect = 2.6
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = -3
Query: 256 RTLGRSQKHCGTSHGPTWS 200
R LG +++HC T GP WS
Sbjct: 147 RHLGDTKEHCSTYTGPRWS 165
>01_06_1801 -
39954425-39954533,39955289-39955578,39955786-39956838,
39956998-39957263,39957345-39957420,39957525-39957605,
39957676-39957831,39958565-39958669,39958761-39959367,
39959514-39959585,39959802-39959953,39960063-39960240,
39960642-39960745,39960822-39960953,39961036-39961132,
39961280-39961407,39961533-39961592,39962799-39962918,
39963011-39963091,39963173-39963361,39963826-39964024,
39964177-39964257,39964398-39964588,39965226-39965382,
39965986-39966119,39966266-39966334,39966434-39966481,
39966572-39966646,39967112-39967192,39967399-39967461,
39967564-39967623,39967754-39967795,39968777-39968902,
39969027-39969176
Length = 1843
Score = 27.9 bits (59), Expect = 2.6
Identities = 12/27 (44%), Positives = 18/27 (66%)
Frame = -2
Query: 272 ASFRVPDIRPVAEALWYVAWAHVVNEI 192
A+FRVPD P+A L+ + WA V ++
Sbjct: 29 AAFRVPDPVPMARFLYELCWAVVRGDL 55
>09_03_0041 +
11826788-11828002,11828101-11828563,11828668-11828798,
11829227-11829577,11829723-11829879,11829968-11830260,
11830367-11830426,11830530-11830619,11830774-11830857
Length = 947
Score = 26.6 bits (56), Expect = 6.0
Identities = 18/45 (40%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Frame = +3
Query: 174 ENPEVHDFVDHVGPCDVP---QCFCDRPNVR-NTKTG-KCVPESE 293
E PE DFV +GP +P + DRP R NT+ + +PE E
Sbjct: 301 ECPETEDFVQKLGPVLLPWEREGDVDRPRKRSNTELAERTIPEHE 345
>03_02_0914 -
12351553-12351679,12351966-12352102,12352558-12352653,
12353056-12353989,12354985-12355175
Length = 494
Score = 26.2 bits (55), Expect = 7.9
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = -2
Query: 281 YTFASFRVPDIRPVAEALWYVAWAHVVNEIVDFGILTVRLGH 156
+ +A+F RP+A LW V + V I +L V +G+
Sbjct: 259 FEYANFNSTGNRPMAITLWAVTFTAVKKTISRLLLLVVSMGY 300
>02_05_0086 +
25703513-25703573,25703665-25703760,25703966-25704092,
25704236-25704350,25705249-25705305
Length = 151
Score = 26.2 bits (55), Expect = 7.9
Identities = 12/38 (31%), Positives = 22/38 (57%), Gaps = 1/38 (2%)
Frame = +1
Query: 106 QRENARKVNIQFCIALKWPSRTVR-IPKSTISLTTWAH 216
Q + + ++ +CIA +W TVR IPK I++ + +
Sbjct: 12 QEQRSSIASVLWCIADEWNDLTVRIIPKECIAMCNFCY 49
>01_01_0175 - 1503254-1503575,1504398-1504657,1506162-1507028
Length = 482
Score = 26.2 bits (55), Expect = 7.9
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 275 FASFRVPDIRPVAEALWYVAWAHVVNEIVDFGILTVRLGHLRAI 144
F R D + A+AL + AHV+N+I I L H +A+
Sbjct: 430 FLQARGIDAKTAADALNFAFGAHVINQIPFKPIEKKTLAHFKAL 473
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,270,919
Number of Sequences: 37544
Number of extensions: 217438
Number of successful extensions: 625
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 615
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 564709324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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