Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29a07
(366 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical p... 38 0.002
U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical pr... 33 0.047
Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical pr... 32 0.14
Z70212-9|CAA94168.1| 491|Caenorhabditis elegans Hypothetical pr... 30 0.44
Z50742-6|CAA90619.1| 491|Caenorhabditis elegans Hypothetical pr... 30 0.44
Z81088-11|CAB03132.1| 339|Caenorhabditis elegans Hypothetical p... 29 1.3
U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein. 28 1.8
AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior phar... 28 1.8
Z83232-3|CAE46672.1| 381|Caenorhabditis elegans Hypothetical pr... 28 2.4
Z83232-2|CAB05754.2| 420|Caenorhabditis elegans Hypothetical pr... 28 2.4
AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical... 28 2.4
U97008-6|AAB52307.1| 323|Caenorhabditis elegans Serpentine rece... 27 4.1
Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical pr... 27 5.4
U64605-3|AAF98605.3| 423|Caenorhabditis elegans Hypothetical pr... 27 5.4
U61955-9|AAC24409.3| 371|Caenorhabditis elegans Hypothetical pr... 27 5.4
Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical pr... 26 7.2
Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical p... 26 7.2
Z19152-8|CAA79543.2| 89|Caenorhabditis elegans Hypothetical pr... 26 7.2
AF303272-1|AAG50230.1| 89|Caenorhabditis elegans barrier-to-au... 26 7.2
AF125963-1|AAD14742.1| 339|Caenorhabditis elegans Serpentine re... 26 7.2
AF047657-9|AAK18945.1| 329|Caenorhabditis elegans Seven tm rece... 26 7.2
>U50311-12|AAA92315.1| 169|Caenorhabditis elegans Hypothetical
protein C25E10.10 protein.
Length = 169
Score = 38.3 bits (85), Expect = 0.002
Identities = 25/67 (37%), Positives = 34/67 (50%), Gaps = 3/67 (4%)
Frame = +3
Query: 105 PTRKCP-KGEHSVLYCPQMAEPDC--ENPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGK 275
P RK +G+ + C EP C ENPE D V C C C + VR++ TGK
Sbjct: 71 PIRKPECEGDEELKACGSACEPTCDNENPEC-DLV-----CMTNVCQCKKGLVRDSATGK 124
Query: 276 CVPESEC 296
CV +++C
Sbjct: 125 CVEKNKC 131
>U42830-3|AAC48275.1| 195|Caenorhabditis elegans Hypothetical
protein C53B7.2 protein.
Length = 195
Score = 33.5 bits (73), Expect = 0.047
Identities = 17/50 (34%), Positives = 23/50 (46%)
Frame = +3
Query: 147 CPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTGKCVPESEC 296
C QM P CE+P VD C P C C P + + +C+P + C
Sbjct: 38 CTQMCPPTCESPNPQCRVD----CTRPSCTC-LPGHVYSNSRQCIPANSC 82
>Z81573-3|CAB04624.3| 398|Caenorhabditis elegans Hypothetical
protein M02G9.2 protein.
Length = 398
Score = 31.9 bits (69), Expect = 0.14
Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 1/89 (1%)
Frame = +3
Query: 51 IVLLFVVAAVGYVTGQHFPTR-KCPKGEHSVLYCPQMAEPDCENPEVHDFVDHVGPCDVP 227
+V FV+A+V + + C GE C M P+ ++ + P P
Sbjct: 7 LVAFFVIASVQAIPQRTKRQNCDCTPGEAPKCGCQVMPTPEIGGGQM---ICTCSPPVPP 63
Query: 228 QCFCDRPNVRNTKTGKCVPESEC**NCVN 314
+C C NVRN TG +P NCV+
Sbjct: 64 KCVCTEGNVRNIITGPSLPALFKPYNCVS 92
>Z70212-9|CAA94168.1| 491|Caenorhabditis elegans Hypothetical
protein R04D3.1 protein.
Length = 491
Score = 30.3 bits (65), Expect = 0.44
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 39 MKSFIVLLFVVAAVGYVTGQHFPTRKCPKG 128
M ++L F VA VGY+ + RK PKG
Sbjct: 1 MSPLLILAFFVATVGYLVHFYLKVRKYPKG 30
>Z50742-6|CAA90619.1| 491|Caenorhabditis elegans Hypothetical
protein R04D3.1 protein.
Length = 491
Score = 30.3 bits (65), Expect = 0.44
Identities = 13/30 (43%), Positives = 17/30 (56%)
Frame = +3
Query: 39 MKSFIVLLFVVAAVGYVTGQHFPTRKCPKG 128
M ++L F VA VGY+ + RK PKG
Sbjct: 1 MSPLLILAFFVATVGYLVHFYLKVRKYPKG 30
>Z81088-11|CAB03132.1| 339|Caenorhabditis elegans Hypothetical
protein F53F1.11 protein.
Length = 339
Score = 28.7 bits (61), Expect = 1.3
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -1
Query: 351 LQTDTLILFTCIDLHNFINIQIPVHIC 271
L+T+T +L IDL NF+ + HIC
Sbjct: 168 LETETGVLTGVIDLTNFVAVYAVAHIC 194
>U07628-1|AAA17738.1| 515|Caenorhabditis elegans APX-1 protein.
Length = 515
Score = 28.3 bits (60), Expect = 1.8
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +3
Query: 132 HSVLYCPQ-MAEPDCENPEVHDFVDHVGPCDVP-QCFCDRPNVRNTKTGKCVPESEC-** 302
H V C + DC NP + G C P QC C T+ +C+P + C
Sbjct: 158 HGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSC-ADGFNGTRCEQCLPRAGCVNG 216
Query: 303 NCVN 314
+CVN
Sbjct: 217 DCVN 220
>AF101319-2|AAC69353.4| 515|Caenorhabditis elegans Anterior pharynx
in excess protein1 protein.
Length = 515
Score = 28.3 bits (60), Expect = 1.8
Identities = 20/64 (31%), Positives = 27/64 (42%), Gaps = 3/64 (4%)
Frame = +3
Query: 132 HSVLYCPQ-MAEPDCENPEVHDFVDHVGPCDVP-QCFCDRPNVRNTKTGKCVPESEC-** 302
H V C + DC NP + G C P QC C T+ +C+P + C
Sbjct: 158 HGVRRCSAGWSGEDCSNPICAGGCSNRGRCVAPNQCSC-ADGFNGTRCEQCLPRAGCVNG 216
Query: 303 NCVN 314
+CVN
Sbjct: 217 DCVN 220
>Z83232-3|CAE46672.1| 381|Caenorhabditis elegans Hypothetical
protein K04B12.2b protein.
Length = 381
Score = 27.9 bits (59), Expect = 2.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 26 ENVDNEKFYCIVVCCGSCRLRHRATFS 106
+N+ +E+F+C+ CC RL T++
Sbjct: 196 KNLLDEEFFCLAPCCSGMRLFQAETYT 222
>Z83232-2|CAB05754.2| 420|Caenorhabditis elegans Hypothetical
protein K04B12.2a protein.
Length = 420
Score = 27.9 bits (59), Expect = 2.4
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = +2
Query: 26 ENVDNEKFYCIVVCCGSCRLRHRATFS 106
+N+ +E+F+C+ CC RL T++
Sbjct: 235 KNLLDEEFFCLAPCCSGMRLFQAETYT 261
>AF016450-10|AAB65990.1| 166|Caenorhabditis elegans Hypothetical
protein B0238.12 protein.
Length = 166
Score = 27.9 bits (59), Expect = 2.4
Identities = 20/68 (29%), Positives = 24/68 (35%)
Frame = +3
Query: 93 GQHFPTRKCPKGEHSVLYCPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRPNVRNTKTG 272
GQ P C C EP C NP C C C VRN T
Sbjct: 32 GQRLP---CRGRNEEYKTCGTACEPSCTNPNPMC----TKQCINNVCQCRSGYVRNEITR 84
Query: 273 KCVPESEC 296
+CV +++C
Sbjct: 85 QCVRQAQC 92
>U97008-6|AAB52307.1| 323|Caenorhabditis elegans Serpentine
receptor, class h protein275 protein.
Length = 323
Score = 27.1 bits (57), Expect = 4.1
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -1
Query: 327 FTCIDLHNFINIQIPVHICQFSC 259
F + LH I I+IPVH F C
Sbjct: 12 FQALALHIMIGIEIPVHFLGFYC 34
>Z69902-6|CAD89723.1| 684|Caenorhabditis elegans Hypothetical
protein C47D12.6b protein.
Length = 684
Score = 26.6 bits (56), Expect = 5.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 233 ALWYVAWAHVVNEIVDF 183
A WY AH+ N++VDF
Sbjct: 301 AFWYPKGAHIYNKLVDF 317
>Z69902-5|CAA93762.1| 725|Caenorhabditis elegans Hypothetical
protein C47D12.6a protein.
Length = 725
Score = 26.6 bits (56), Expect = 5.4
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -2
Query: 233 ALWYVAWAHVVNEIVDF 183
A WY AH+ N++VDF
Sbjct: 342 AFWYPKGAHIYNKLVDF 358
>U64605-3|AAF98605.3| 423|Caenorhabditis elegans Hypothetical
protein C05D9.3 protein.
Length = 423
Score = 26.6 bits (56), Expect = 5.4
Identities = 13/47 (27%), Positives = 18/47 (38%)
Frame = +3
Query: 114 KCPKGEHSVLYCPQMAEPDCENPEVHDFVDHVGPCDVPQCFCDRPNV 254
+CP H V ++ E C G C QC C++P V
Sbjct: 253 ECPLASHGVSKASEL-EDKCRFNSSSPVCSASGKCKCGQCQCNKPTV 298
>U61955-9|AAC24409.3| 371|Caenorhabditis elegans Hypothetical
protein M03D4.6 protein.
Length = 371
Score = 26.6 bits (56), Expect = 5.4
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = -2
Query: 95 PGDVTDSCHNKQQYNKTFHC 36
PG + DS YNK FHC
Sbjct: 251 PGTIVDSVIVSPDYNKFFHC 270
>Z81573-1|CAB04625.3| 909|Caenorhabditis elegans Hypothetical
protein M02G9.1 protein.
Length = 909
Score = 26.2 bits (55), Expect = 7.2
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = +3
Query: 87 VTGQHFPTRKCPKGEHSVLYCPQMAEPDC 173
VT P P+ + + CPQ+ +P C
Sbjct: 503 VTTTQAPPAPAPQQQQQLASCPQLCQPQC 531
>Z69361-2|CAA93288.1| 2165|Caenorhabditis elegans Hypothetical protein
F25H8.3 protein.
Length = 2165
Score = 26.2 bits (55), Expect = 7.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 229 CGTSHGPTWSTKSWTS 182
C T H P W T +W+S
Sbjct: 1689 CRTKHCPRWKTTTWSS 1704
>Z69360-10|CAA93287.1| 2165|Caenorhabditis elegans Hypothetical
protein F25H8.3 protein.
Length = 2165
Score = 26.2 bits (55), Expect = 7.2
Identities = 8/16 (50%), Positives = 10/16 (62%)
Frame = -3
Query: 229 CGTSHGPTWSTKSWTS 182
C T H P W T +W+S
Sbjct: 1689 CRTKHCPRWKTTTWSS 1704
>Z19152-8|CAA79543.2| 89|Caenorhabditis elegans Hypothetical
protein B0464.7 protein.
Length = 89
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 265 FVFRTLGRSQKHCGTSHGPTWSTKSWTSGFSQSGSAI*GQY 143
FV +G + C GPT+ TK +GF ++ + GQY
Sbjct: 10 FVGEPMGDKEVTCIAGIGPTYGTKLTDAGFDKA-YVLFGQY 49
>AF303272-1|AAG50230.1| 89|Caenorhabditis elegans
barrier-to-autointegration factor protein.
Length = 89
Score = 26.2 bits (55), Expect = 7.2
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = -3
Query: 265 FVFRTLGRSQKHCGTSHGPTWSTKSWTSGFSQSGSAI*GQY 143
FV +G + C GPT+ TK +GF ++ + GQY
Sbjct: 10 FVGEPMGDKEVTCIAGIGPTYGTKLTDAGFDKA-YVLFGQY 49
>AF125963-1|AAD14742.1| 339|Caenorhabditis elegans Serpentine
receptor, class d (delta)protein 20 protein.
Length = 339
Score = 26.2 bits (55), Expect = 7.2
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -1
Query: 351 LQTDTLILFTCIDLHNFINIQIPVHIC 271
L+T+T IL IDL NF+ + H C
Sbjct: 168 LETETGILTGVIDLTNFLAVYAVAHSC 194
>AF047657-9|AAK18945.1| 329|Caenorhabditis elegans Seven tm
receptor protein 39 protein.
Length = 329
Score = 26.2 bits (55), Expect = 7.2
Identities = 13/47 (27%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Frame = -2
Query: 341 TL*FYLHV*IYTILLTF---RFRYTFASFRVPDIRPVAEALWYVAWA 210
T+ ++V IY +++TF +F + + S PD+ + E +AW+
Sbjct: 89 TISLVVYVTIYAVVVTFLAVQFAFRYVSLFNPDLTKLFENYGAIAWS 135
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,241,008
Number of Sequences: 27780
Number of extensions: 206230
Number of successful extensions: 551
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 506
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 550
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 514188384
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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