Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29a06
         (231 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC688.08 |srb8|med12|mediator complex subunit Srb8 |Schizosacc...    25   1.8  
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc...    24   3.1  
SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    23   4.1  
SPBC16C6.06 |pep1|vps10|sorting receptor for CPY|Schizosaccharom...    23   5.4  
SPAC56F8.04c |coq2|ppt1|para-hydroxybenzoate--polyprenyltransfer...    23   7.2  
SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|...    22   9.5  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    22   9.5  

>SPAC688.08 |srb8|med12|mediator complex subunit Srb8
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1233

 Score = 24.6 bits (51), Expect = 1.8
 Identities = 12/28 (42%), Positives = 17/28 (60%)
 Frame = -2

Query: 122 LFGFYYSMKQCNTKQILIAQIRHYSLHS 39
           LF F+YSM Q  TK ++   + H+S  S
Sbjct: 604 LFAFHYSMFQVMTK-LIADNLVHFSFQS 630


>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
           Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1141

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/24 (41%), Positives = 16/24 (66%)
 Frame = -1

Query: 111 LLFNETMQHQTNLNSTNQTLFTTF 40
           LL  ++  HQ + +S+  +LFTTF
Sbjct: 165 LLTKKSSSHQGSSHSSQPSLFTTF 188


>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1066

 Score = 23.4 bits (48), Expect = 4.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 102 NETMQHQTNLNSTNQTLFTT 43
           +E  QH++N+NS++ T F +
Sbjct: 610 SEVKQHESNINSSSATDFVS 629


>SPBC16C6.06 |pep1|vps10|sorting receptor for
           CPY|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1466

 Score = 23.0 bits (47), Expect = 5.4
 Identities = 9/27 (33%), Positives = 14/27 (51%)
 Frame = -2

Query: 89  NTKQILIAQIRHYSLHSTN*GNNFYKF 9
           N   + +   ++    +TN G NFYKF
Sbjct: 764 NKNSVYMVTSKNIVYFTTNRGKNFYKF 790


>SPAC56F8.04c
           |coq2|ppt1|para-hydroxybenzoate--
           polyprenyltransferaseCoq2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 358

 Score = 22.6 bits (46), Expect = 7.2
 Identities = 7/32 (21%), Positives = 16/32 (50%)
 Frame = -1

Query: 138 IYSTEFVWILLFNETMQHQTNLNSTNQTLFTT 43
           +Y +   WI+L++    HQ   +     +++T
Sbjct: 233 LYLSTISWIVLYDTIYAHQDKRDDVKANIYST 264


>SPAC27E2.04c |mug155||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 187

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = -1

Query: 228 FFYVFKMIYSSYYVLHFYHQ 169
           F ++  ++Y S +   FYHQ
Sbjct: 103 FSHLLVLVYPSVFTTAFYHQ 122


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 22.2 bits (45), Expect = 9.5
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +1

Query: 112 NPNKFRAVNSLHISDFS 162
           +PNK  +  S+ ISDFS
Sbjct: 301 SPNKSSSPTSIEISDFS 317


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 776,641
Number of Sequences: 5004
Number of extensions: 11719
Number of successful extensions: 23
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 22
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23
length of database: 2,362,478
effective HSP length: 56
effective length of database: 2,082,254
effective search space used: 41645080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)