Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29a05
         (354 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    26   2.0  
SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces...    25   2.6  
SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces...    25   3.4  
SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha su...    25   4.5  
SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|ch...    24   6.0  
SPAC1B3.10c |||SEL1 repeat protein, unknown biological role|Schi...    24   6.0  
SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex sub...    24   6.0  
SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr ...    24   6.0  
SPAC1296.03c |sxa2||serine carboxypeptidase Sxa2|Schizosaccharom...    24   7.9  
SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr 1||...    24   7.9  
SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces pom...    24   7.9  
SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces pombe...    24   7.9  
SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomy...    24   7.9  

>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 25.8 bits (54), Expect = 2.0
 Identities = 18/60 (30%), Positives = 27/60 (45%)
 Frame = -2

Query: 269 DAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSR 90
           D  +PS  P    +SS+  S  RH  +   +L S     +   D   LRD +  + RVS+
Sbjct: 119 DNLIPSPLPESASRSSSQSSHQRHSRDGRGELGSEHGERRSAMDG--LRDRHIRKVRVSQ 176


>SPAC2C4.14c |ppk11||PAK-related kinase Ppk11|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 312

 Score = 25.4 bits (53), Expect = 2.6
 Identities = 12/25 (48%), Positives = 14/25 (56%)
 Frame = +1

Query: 220 VDDFRSWRGVVLGRAASCCDLLRLS 294
           VD FR W  +      SC DLL+LS
Sbjct: 72  VDGFRLWITMEYCDGGSCLDLLKLS 96


>SPBP8B7.30c |thi5||transcription factor Thi5|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 857

 Score = 25.0 bits (52), Expect = 3.4
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 5/46 (10%)
 Frame = +1

Query: 61  DFTSR-----VSHSKRETRRRSPFGSRRSMLSVFFLTRASRLRRSG 183
           DF+SR         + + RRR P  SRR +       RA ++R SG
Sbjct: 5   DFSSRSLFLEAKEEEYKQRRRVPLDSRRRVRRACLSCRAKKIRCSG 50


>SPAC458.07 |tfa1|SPAPYUG7.01|transcription factor TFIIE alpha
           subunit Tfa1 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 24.6 bits (51), Expect = 4.5
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = -2

Query: 290 SLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 129
           +++  + D  L  TT    +  STDY   + +TE   +L S      K+T SI+
Sbjct: 349 NVDDEEDDDFLDVTTATSLQNKSTDYGSVKRKTE---NLNSDSDIQNKRTKSIE 399


>SPAC3C7.04 |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 783

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 302 GAGLSLNRSQHDAALPSTTPRQERKSS 222
           G  LS+  S+ DAALP+  P  E + S
Sbjct: 427 GRPLSIADSECDAALPTVVPELEIEGS 453


>SPAC1B3.10c |||SEL1 repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 680

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 14/35 (40%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
 Frame = +3

Query: 63  LY*SRFAFKTR-DATSKPIWIAEIDAIGFFLNTCI 164
           LY  +F    R  ATS  I + EID  G+F N+ +
Sbjct: 467 LYYKKFVEAIRASATSMAIALEEIDEYGYFHNSFV 501


>SPBC16E9.01c |php4|SPBP16F5.09c|CCAAT-binding factor complex
           subunit Php4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 295

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 12/38 (31%), Positives = 22/38 (57%)
 Frame = -3

Query: 244 PARNGSRLQTIPSPDIELSYIRTFGAVMHVLRKKPIAS 131
           P+ NG R++   SP  E+++     AVM  +RK+ + +
Sbjct: 186 PSENG-RIRVSMSPQNEINFTPENPAVMEKIRKRGVCN 222


>SPAC57A7.05 |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1337

 Score = 24.2 bits (50), Expect = 6.0
 Identities = 19/62 (30%), Positives = 25/62 (40%), Gaps = 1/62 (1%)
 Frame = -2

Query: 308 SPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR-SRDARVKKKTDSI 132
           S  +  S   SQH   L    P  E+KS  D S PR +   +      R  R  K  D+ 
Sbjct: 134 SSSSSSSSQSSQHSTHLQFQIPSNEKKSLDDPS-PRRKPSFFSKSNLKRKYRYLKNPDAW 192

Query: 131 DL 126
           +L
Sbjct: 193 NL 194


>SPAC1296.03c |sxa2||serine carboxypeptidase
           Sxa2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 6/24 (25%), Positives = 15/24 (62%)
 Frame = +3

Query: 84  FKTRDATSKPIWIAEIDAIGFFLN 155
           ++T++  +  IW+  I  +G++ N
Sbjct: 236 YETQEQITASIWVEHISKLGYYFN 259


>SPAC4F10.16c |||P-type ATPase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1367

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = -2

Query: 275 QHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRD 162
           QH+ +L    P  +   S+ + E +   E + + RSRD
Sbjct: 33  QHNGSLAHEGPTNQTDYSSRHHESQFSQEAHAEQRSRD 70


>SPAC227.16c |||GINS complex subunit Psf3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 166

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = +3

Query: 111 PIWIAEIDAIGFFLNTCITAP 173
           P W+AE+ AI  F++  + AP
Sbjct: 43  PFWLAEVLAINSFVSIHMPAP 63


>SPACUNK4.14 |mdb1||BRCT domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 520

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 14/56 (25%), Positives = 24/56 (42%)
 Frame = -2

Query: 293 LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDL 126
           ++L   +  +   S    +E   ST+YS P    E  PD   + + V+ K    +L
Sbjct: 230 IALKEKESTSQDESNREAEEAPISTNYSFPSSSLEDQPDKNVQSSAVENKNKHTNL 285


>SPAC2F3.13c |||queuine tRNA-ribosyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 23.8 bits (49), Expect = 7.9
 Identities = 16/42 (38%), Positives = 22/42 (52%)
 Frame = -2

Query: 128 LRDPNGLRRRVSRFECETRLVKSHCLEPPDSRGSTVSISLPD 3
           L  P+G R  VS    + +++K+ C   P SRG TV    PD
Sbjct: 6   LSSPSGAR--VSSVTVKNKVLKTPCFFLPTSRG-TVPHLTPD 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,339,415
Number of Sequences: 5004
Number of extensions: 24567
Number of successful extensions: 75
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 75
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 105935336
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)