Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29a05
(354 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0232 + 21130122-21130454,21130895-21131053,21131424-211315... 33 0.085
01_06_0695 - 31292622-31293317 28 1.8
08_02_0104 + 12404890-12405129,12405244-12405333,12405953-124060... 28 2.4
06_03_1055 - 27234824-27234838,27236087-27236125,27236322-272373... 28 2.4
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 27 3.2
02_01_0083 - 566201-567127,567223-567464,567623-567880,568173-56... 27 3.2
10_08_0113 - 14896341-14897153 27 4.2
08_02_1081 + 24215323-24215335,24215450-24215572,24216241-242164... 27 4.2
01_06_0723 + 31501900-31502808,31502846-31503295 27 4.2
01_01_0386 - 2985563-2985986,2986301-2986390,2986529-2986668,298... 27 4.2
07_03_0699 + 20772415-20773450,20789050-20789606,20790971-207915... 26 7.4
01_01_0785 - 6076089-6077615 26 7.4
05_01_0148 - 985745-986180,986290-986385,986498-986694,986824-98... 26 9.8
>02_04_0232 +
21130122-21130454,21130895-21131053,21131424-21131582,
21132420-21132512,21133321-21133437,21133623-21133697,
21133878-21134104,21134200-21135073
Length = 678
Score = 32.7 bits (71), Expect = 0.085
Identities = 17/43 (39%), Positives = 20/43 (46%)
Frame = -2
Query: 257 PSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 129
PS TP ER S+D PR Y R+RD K+ S D
Sbjct: 365 PSDTPHLERSQSSDRRRPRSSDPRYTPSRTRDEDAHKQHSSRD 407
>01_06_0695 - 31292622-31293317
Length = 231
Score = 28.3 bits (60), Expect = 1.8
Identities = 16/45 (35%), Positives = 18/45 (40%)
Frame = -2
Query: 305 PGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLR 171
P L Q D PS++ SST S P HR L P R
Sbjct: 3 PSTKQLLPMPQQDPNSPSSSTSSSSSSSTSPSHPHHRAPLPPSPR 47
>08_02_0104 +
12404890-12405129,12405244-12405333,12405953-12406036,
12406888-12407132,12409032-12409095,12409270-12409968,
12410063-12410176,12410287-12410418,12410594-12410770,
12411085-12411138,12411230-12411292,12411396-12412307,
12412408-12412535,12413680-12413962
Length = 1094
Score = 27.9 bits (59), Expect = 2.4
Identities = 19/61 (31%), Positives = 26/61 (42%)
Frame = -2
Query: 311 ESPGAGLSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSI 132
+SPG L R HD +L KSST + R E SR +KT+S+
Sbjct: 734 DSPGDSL---RDVHDISLNLKLSLDSEKSSTKENSVRRNLEDAVQKLSRGVSANRKTESV 790
Query: 131 D 129
+
Sbjct: 791 E 791
>06_03_1055 -
27234824-27234838,27236087-27236125,27236322-27237388,
27237422-27237630,27237650-27238053
Length = 577
Score = 27.9 bits (59), Expect = 2.4
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +1
Query: 4 SGKDMLTVEPRESGGSKQCDFTSRVSHSKRETRRRSPFGS 123
+GK + E E S+QCD T + +S RE ++R+P+ +
Sbjct: 435 AGKPISEHEAIEHLWSRQCDLTEILQNSSRE-KKRNPYAA 473
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 27.5 bits (58), Expect = 3.2
Identities = 22/85 (25%), Positives = 29/85 (34%)
Frame = -2
Query: 284 NRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLR 105
+RS+ A R +S D P HR P R R K D R P+
Sbjct: 501 SRSRSPAEHQRRDVRNRLRSGRDGGGPDHRNSSPPVNRGRSRSRSKSRDPSKSRSPDAPA 560
Query: 104 RRVSRFECETRLVKSHCLEPPDSRG 30
++ S R S P S+G
Sbjct: 561 KKGSSKYNRRRSSSSRSSSPAGSKG 585
>02_01_0083 -
566201-567127,567223-567464,567623-567880,568173-568298,
568420-568489
Length = 540
Score = 27.5 bits (58), Expect = 3.2
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = +2
Query: 8 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEA 112
AR C W PESR ++ V ++A ++R+ A
Sbjct: 449 ARECLQWEPESRPTMSEVVQILATIAPSSRKHAAA 483
>10_08_0113 - 14896341-14897153
Length = 270
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/27 (51%), Positives = 18/27 (66%), Gaps = 4/27 (14%)
Frame = +3
Query: 189 LSSMSGLGIVCRRL----PFLAGCCAR 257
L++++GLGI RR P LAGCC R
Sbjct: 181 LAAIAGLGIPWRRSWPSPPSLAGCCCR 207
>08_02_1081 +
24215323-24215335,24215450-24215572,24216241-24216489,
24218517-24218720,24218864-24218993,24219610-24219679,
24219766-24219900,24219996-24220209,24220314-24220455,
24220630-24220851,24220997-24221195
Length = 566
Score = 27.1 bits (57), Expect = 4.2
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = +1
Query: 40 SGGSKQCDFTSRVSHSKRETRRRSPFGSRRSML 138
S G+ Q T R HS E RRRS R +L
Sbjct: 212 SAGTDQMPNTPRSKHSATEQRRRSKINDRFQLL 244
>01_06_0723 + 31501900-31502808,31502846-31503295
Length = 452
Score = 27.1 bits (57), Expect = 4.2
Identities = 13/35 (37%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = -2
Query: 305 PGAGLSLNRSQHDAALPSTTPRQERKS-STDYSEP 204
PG L + DAA +TT +++R++ DYS P
Sbjct: 93 PGRALGFFHKEQDAAAVATTRKRKRRAIIVDYSTP 127
>01_01_0386 -
2985563-2985986,2986301-2986390,2986529-2986668,
2986798-2986893,2987003-2987042,2987760-2987887
Length = 305
Score = 27.1 bits (57), Expect = 4.2
Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 1/52 (1%)
Frame = -2
Query: 254 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDS-IDLRDPNGLRR 102
S +PR+ R YS R R+ RD+R ++++ S D R P G R
Sbjct: 143 SPSPRRGRSRGRSYSRSRSRSYSRSQSPRRDSRNERRSRSPRDSRSPRGSPR 194
>07_03_0699 +
20772415-20773450,20789050-20789606,20790971-20791567,
20792258-20792413
Length = 781
Score = 26.2 bits (55), Expect = 7.4
Identities = 18/66 (27%), Positives = 27/66 (40%)
Frame = -2
Query: 254 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECET 75
+ +PR S +D S P H ++ + D VKK + +L D G E E
Sbjct: 591 AASPRLTSISDSDGSYPVHAAAMFGRTKIIDELVKKCPNYYELVDDKGRNLLHIAVESEQ 650
Query: 74 RLVKSH 57
+V H
Sbjct: 651 EMVVRH 656
>01_01_0785 - 6076089-6077615
Length = 508
Score = 26.2 bits (55), Expect = 7.4
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +2
Query: 8 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAH 115
A + SLWSPES E + + Q R+V H
Sbjct: 336 AEVASLWSPESGEPITAEKIAEMKYTQAVAREVVRH 371
>05_01_0148 -
985745-986180,986290-986385,986498-986694,986824-986919,
987020-987059,987751-987857
Length = 323
Score = 25.8 bits (54), Expect = 9.8
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = -2
Query: 254 STTPRQERKSSTDYSEPRHRTELYPDLRSR 165
S +PR+ R S YS R R+ Y RSR
Sbjct: 155 SPSPRRGRGRSRSYSRSRSRSRSYSRSRSR 184
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,714,644
Number of Sequences: 37544
Number of extensions: 189757
Number of successful extensions: 667
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 656
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 667
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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