Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt29a05
(354 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U53139-1|AAS80341.1| 90|Caenorhabditis elegans Hypothetical pr... 27 2.8
AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical ... 27 2.8
U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical pr... 27 3.8
DQ178242-1|ABA18181.1| 578|Caenorhabditis elegans Frizzled homo... 27 3.8
AF016413-2|ABA54421.1| 578|Caenorhabditis elegans Caenorhabditi... 27 3.8
AF016413-1|ABA54422.1| 550|Caenorhabditis elegans Caenorhabditi... 27 3.8
AB026113-1|BAA84678.1| 550|Caenorhabditis elegans Cfz2 protein. 27 3.8
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ... 27 5.0
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 27 5.0
Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical pr... 26 6.6
Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical pr... 26 6.6
U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein. 26 6.6
AY305829-1|AAR11974.1| 281|Caenorhabditis elegans nuclear recep... 26 6.6
AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical ... 26 6.6
AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical ... 26 6.6
AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical ... 26 6.6
AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical ... 26 6.6
AF273803-1|AAG15152.1| 433|Caenorhabditis elegans nuclear recep... 26 6.6
AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopepti... 26 6.6
AF016438-6|AAZ32805.1| 284|Caenorhabditis elegans Nuclear hormo... 26 6.6
AF016438-5|AAB65893.2| 408|Caenorhabditis elegans Nuclear hormo... 26 6.6
AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide ... 26 6.6
U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en... 26 8.7
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET... 26 8.7
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET... 26 8.7
AL132847-1|CAB63371.1| 375|Caenorhabditis elegans Hypothetical ... 26 8.7
AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical... 26 8.7
AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical ... 26 8.7
>U53139-1|AAS80341.1| 90|Caenorhabditis elegans Hypothetical
protein F18E3.11 protein.
Length = 90
Score = 27.5 bits (58), Expect = 2.8
Identities = 18/54 (33%), Positives = 25/54 (46%)
Frame = -2
Query: 254 STTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVS 93
STT RKSST PRH + + ++ + S L D N L+R+ S
Sbjct: 30 STTQVVSRKSSTSSDAPRHSLNITVG-EAEMCQITRNNSSNSLNDFNCLQRKNS 82
>AF106581-5|AAC78210.1| 588|Caenorhabditis elegans Hypothetical
protein VC5.2 protein.
Length = 588
Score = 27.5 bits (58), Expect = 2.8
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = +1
Query: 112 PFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWR 243
P R+ +LS FF ++ SR+RRS + R D SW+
Sbjct: 150 PEKRRQELLSEFFASKPSRVRRSTMSRKIAREPTPLTPDMLSWQ 193
>U97002-9|AAB52261.2| 985|Caenorhabditis elegans Hypothetical
protein K09H11.1 protein.
Length = 985
Score = 27.1 bits (57), Expect = 3.8
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = -3
Query: 187 YIRTFGAVMHVLRKKPIASISAIQMGFDVASRVLNA 80
YIRT +VLRKKP S+ D +++NA
Sbjct: 264 YIRTVRGSQYVLRKKPSGSLLPKAHQVDREFKIMNA 299
>DQ178242-1|ABA18181.1| 578|Caenorhabditis elegans Frizzled homolog
protein.
Length = 578
Score = 27.1 bits (57), Expect = 3.8
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 252 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF 88
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
>AF016413-2|ABA54421.1| 578|Caenorhabditis elegans Caenorhabditis
frizzled homologprotein 2, isoform a protein.
Length = 578
Score = 27.1 bits (57), Expect = 3.8
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 252 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF 88
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
>AF016413-1|ABA54422.1| 550|Caenorhabditis elegans Caenorhabditis
frizzled homologprotein 2, isoform b protein.
Length = 550
Score = 27.1 bits (57), Expect = 3.8
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 252 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF 88
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
>AB026113-1|BAA84678.1| 550|Caenorhabditis elegans Cfz2 protein.
Length = 550
Score = 27.1 bits (57), Expect = 3.8
Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 1/56 (1%)
Frame = -1
Query: 252 HN-TPPGTEVVYRLFRAPTSN*VISGPSEP*CTC*EKNR*HRSPRSKWASTSRLAF 88
HN +P G EV + N VI+GPSE CTC + + S +SK + + A+
Sbjct: 168 HNYSPDGPEVGI----SKIDNEVIAGPSECQCTCNQPFQFVASEKSKVGNVTNCAY 219
>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
protein Y32B12B.4 protein.
Length = 1528
Score = 26.6 bits (56), Expect = 5.0
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Frame = +2
Query: 56 NVTLLVAFR-IQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQF 196
N L+AF + A+ D EAHL+ +RC R H G +I QF
Sbjct: 1134 NEKFLLAFALVLRAKYDHEAHLNLVNRCMRNVC-KTHFGETVDEIFQF 1180
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 26.6 bits (56), Expect = 5.0
Identities = 27/88 (30%), Positives = 37/88 (42%), Gaps = 11/88 (12%)
Frame = -2
Query: 302 GAGLSLNRSQHDAALPSTTPRQERKSSTDYSE--PRHRTELY-----PDLRS----RDAR 156
G S + AA S+ P Q++ S+ Y P+ E Y PD R RD+R
Sbjct: 272 GVRASYDPYTQPAAPVSSYPSQQQPSAGYYDNYAPKTAYESYGRERGPDPRDVRDPRDSR 331
Query: 155 VKKKTDSIDLRDPNGLRRRVSRFECETR 72
+ DS L DP R S + E+R
Sbjct: 332 MPDPRDSRALSDPYAAESRYSEYGYESR 359
>Z81512-8|CAH19099.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 59 VTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQFD 199
+T L+ +I NA E++ D + H+++ SEG ++TQ +
Sbjct: 11 LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56
>Z81512-7|CAD54133.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 59 VTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQFD 199
+T L+ +I NA E++ D + H+++ SEG ++TQ +
Sbjct: 11 LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56
>Z70680-3|CAA94575.1| 1263|Caenorhabditis elegans Hypothetical protein
C25G4.5 protein.
Length = 1263
Score = 26.2 bits (55), Expect = 6.6
Identities = 21/74 (28%), Positives = 28/74 (37%)
Frame = -2
Query: 242 RQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVK 63
R KS+ D +E PD ++ D R + + N R+V C T L
Sbjct: 1076 RSPNKSNHDVNETMKALTEMPDYQAADERPNNQPTTSTYGTANTENRKVHINGCHTLL-- 1133
Query: 62 SHCLEPPDSRGSTV 21
S L P G TV
Sbjct: 1134 SLALSMPSRMGETV 1147
>U43562-1|AAC47411.1| 1263|Caenorhabditis elegans DPY-26 protein.
Length = 1263
Score = 26.2 bits (55), Expect = 6.6
Identities = 21/74 (28%), Positives = 28/74 (37%)
Frame = -2
Query: 242 RQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGLRRRVSRFECETRLVK 63
R KS+ D +E PD ++ D R + + N R+V C T L
Sbjct: 1076 RSPNKSNHDVNETMKALTEMPDYQAADERPNNQPTTSTYGTANTENRKVHINGCHTLL-- 1133
Query: 62 SHCLEPPDSRGSTV 21
S L P G TV
Sbjct: 1134 SLALSMPSRMGETV 1147
>AY305829-1|AAR11974.1| 281|Caenorhabditis elegans nuclear receptor
NHR-56 protein.
Length = 281
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 299 AGLSLNRSQHDAALPSTTPRQERKSSTDYS 210
AG+ N+ QHD L ST+ + SS +S
Sbjct: 68 AGMDANKFQHDRDLISTSTSESSDSSGSFS 97
>AL033515-2|CAH19093.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 59 VTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQFD 199
+T L+ +I NA E++ D + H+++ SEG ++TQ +
Sbjct: 11 LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56
>AL033515-1|CAD54179.1| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 59 VTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQFD 199
+T L+ +I NA E++ D + H+++ SEG ++TQ +
Sbjct: 11 LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56
>AL033511-2|CAH19091.1| 509|Caenorhabditis elegans Hypothetical
protein Y44A6E.1b protein.
Length = 509
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 59 VTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQFD 199
+T L+ +I NA E++ D + H+++ SEG ++TQ +
Sbjct: 11 LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56
>AL033511-1|CAA22072.2| 504|Caenorhabditis elegans Hypothetical
protein Y44A6E.1a protein.
Length = 504
Score = 26.2 bits (55), Expect = 6.6
Identities = 13/47 (27%), Positives = 25/47 (53%)
Frame = +2
Query: 59 VTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHGSEGPDITQFD 199
+T L+ +I NA E++ D + H+++ SEG ++TQ +
Sbjct: 11 LTFLILSKI-NATSTTESYFDSSEEAPNVLLNHLNNESEGEELTQIN 56
>AF273803-1|AAG15152.1| 433|Caenorhabditis elegans nuclear receptor
NHR-56 protein.
Length = 433
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 299 AGLSLNRSQHDAALPSTTPRQERKSSTDYS 210
AG+ N+ QHD L ST+ + SS +S
Sbjct: 96 AGMDANKFQHDRDLISTSTSESSDSSGSFS 125
>AF142441-1|AAF66614.1| 701|Caenorhabditis elegans H+/oligopeptide
symporter OPT-3 protein.
Length = 701
Score = 26.2 bits (55), Expect = 6.6
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = -2
Query: 305 PGAG-LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 129
P G + L R +++ + + + + D P+ RTEL + + + +K ++ ID
Sbjct: 379 PSLGRIYLQRVGNESLISDFRYKSDGRLIGDGMLPKGRTELDAGIYTFNTGLKNESQEID 438
Query: 128 LRDPN-GLRRRVSRFECETRLVK-SHCLEPPDSRGSTVSI 15
+ PN G V R + +VK + +E D+ + V +
Sbjct: 439 ISTPNKGYVMAVFRLKDAVEVVKFDYKVEKTDNGATRVFV 478
>AF016438-6|AAZ32805.1| 284|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 56, isoform b protein.
Length = 284
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 299 AGLSLNRSQHDAALPSTTPRQERKSSTDYS 210
AG+ N+ QHD L ST+ + SS +S
Sbjct: 71 AGMDANKFQHDRDLISTSTSESSDSSGSFS 100
>AF016438-5|AAB65893.2| 408|Caenorhabditis elegans Nuclear hormone
receptor familyprotein 56, isoform a protein.
Length = 408
Score = 26.2 bits (55), Expect = 6.6
Identities = 12/30 (40%), Positives = 17/30 (56%)
Frame = -2
Query: 299 AGLSLNRSQHDAALPSTTPRQERKSSTDYS 210
AG+ N+ QHD L ST+ + SS +S
Sbjct: 71 AGMDANKFQHDRDLISTSTSESSDSSGSFS 100
>AF003146-1|AAB54202.1| 701|Caenorhabditis elegans Oligopeptide
transporter protein 3 protein.
Length = 701
Score = 26.2 bits (55), Expect = 6.6
Identities = 23/100 (23%), Positives = 46/100 (46%), Gaps = 3/100 (3%)
Frame = -2
Query: 305 PGAG-LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 129
P G + L R +++ + + + + D P+ RTEL + + + +K ++ ID
Sbjct: 379 PSLGRIYLQRVGNESLISDFRYKSDGRLIGDGMLPKGRTELDAGIYTFNTGLKNESQEID 438
Query: 128 LRDPN-GLRRRVSRFECETRLVK-SHCLEPPDSRGSTVSI 15
+ PN G V R + +VK + +E D+ + V +
Sbjct: 439 ISTPNKGYVMAVFRLKDAVEVVKFDYKVEKTDNGATRVFV 478
>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
protein precursor protein.
Length = 2272
Score = 25.8 bits (54), Expect = 8.7
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +2
Query: 8 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHG------ 169
A++ +W E A + LV A+ DVEA L +GDR + ++ G
Sbjct: 1288 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDRPFMIYTDASRKGIGAVLA 1346
Query: 170 SEGPDITQFDV 202
EGPD Q +
Sbjct: 1347 QEGPDGQQHPI 1357
>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
protein, isoforma protein.
Length = 2175
Score = 25.8 bits (54), Expect = 8.7
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +2
Query: 8 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHG------ 169
A++ +W E A + LV A+ DVEA L +GDR + ++ G
Sbjct: 1191 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDRPFMIYTDASRKGIGAVLA 1249
Query: 170 SEGPDITQFDV 202
EGPD Q +
Sbjct: 1250 QEGPDGQQHPI 1260
>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
protein, isoformb protein.
Length = 2186
Score = 25.8 bits (54), Expect = 8.7
Identities = 21/71 (29%), Positives = 31/71 (43%), Gaps = 6/71 (8%)
Frame = +2
Query: 8 ARICSLWSPESREALNNVTLLVAFRIQNARRDVEAHLDRGDRCYRFFS*HVHHG------ 169
A++ +W E A + LV A+ DVEA L +GDR + ++ G
Sbjct: 1202 AKVAWIWEKEQEIAFQELKKLVCQTPVLAQPDVEAAL-KGDRPFMIYTDASRKGIGAVLA 1260
Query: 170 SEGPDITQFDV 202
EGPD Q +
Sbjct: 1261 QEGPDGQQHPI 1271
>AL132847-1|CAB63371.1| 375|Caenorhabditis elegans Hypothetical
protein Y48G10A.2 protein.
Length = 375
Score = 25.8 bits (54), Expect = 8.7
Identities = 9/31 (29%), Positives = 19/31 (61%)
Frame = +1
Query: 10 KDMLTVEPRESGGSKQCDFTSRVSHSKRETR 102
K ++ EP+E+ + D+ + ++HSK E +
Sbjct: 326 KMLIRTEPKETALRRAADYLNELTHSKTEKK 356
>AL031630-13|CAA20992.1| 814|Caenorhabditis elegans Hypothetical
protein Y38H6C.14 protein.
Length = 814
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/47 (34%), Positives = 25/47 (53%)
Frame = -2
Query: 293 LSLNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARV 153
++ +RS + S+ Q+ S +DY PRH +L P RS + RV
Sbjct: 71 ITQHRSSYKVTKSSSCHFQDEASPSDYQMPRH-LDLKP--RSSEVRV 114
>AF016683-5|AAB66196.2| 1010|Caenorhabditis elegans Hypothetical
protein K09F6.6 protein.
Length = 1010
Score = 25.8 bits (54), Expect = 8.7
Identities = 16/39 (41%), Positives = 19/39 (48%)
Frame = -1
Query: 312 RITWRRAESQQIAARRCSTEHNTPPGTEVVYRLFRAPTS 196
RIT RRA +I ++ E TP TE V L R S
Sbjct: 614 RITRRRAGQNKIVKKKLVLEPLTPRSTESVSNLKRMKIS 652
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,761,851
Number of Sequences: 27780
Number of extensions: 148794
Number of successful extensions: 508
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 495
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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