Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt29a05
         (354 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    25   0.26 
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     22   2.5  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          21   4.3  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   5.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   5.7  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    21   5.7  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   5.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   5.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   5.7  
AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein ...    20   7.5  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    20   9.9  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 25.0 bits (52), Expect = 0.26
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = -2

Query: 290 SLNRSQHDAALPSTTPRQERKSST 219
           ++N+ Q   +   TTP++ERK++T
Sbjct: 776 NVNKEQSPNSTKETTPKKERKTAT 799


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.8 bits (44), Expect = 2.5
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -3

Query: 289 VSTDRSTTLLYRAQHPARNGSRLQTIPSP 203
           VS DR++ + YR  +PA     +Q+ PSP
Sbjct: 416 VSPDRTSPMEYRLYNPA----LIQSQPSP 440


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.0 bits (42), Expect = 4.3
 Identities = 23/75 (30%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
 Frame = +1

Query: 85  SKRE-TRRRSPFGSRRSMLSVFFLTRASRLRRSGYNSVRCRGSE*SVDDFRSWRGVVLGR 261
           ++RE  R  +PF +  +  S   L RA    RSG  SV+   +E     F    G + GR
Sbjct: 502 ARREGIRLAAPFNASPTTWSPADLDRALEAIRSGQTSVQRASTE-----FGIPTGTLYGR 556

Query: 262 A-ASCCDLLRLSPAP 303
                 +L R +P P
Sbjct: 557 CKREGIELSRSNPTP 571



 Score = 21.0 bits (42), Expect = 4.3
 Identities = 9/19 (47%), Positives = 11/19 (57%)
 Frame = -1

Query: 288 SQQIAARRCSTEHNTPPGT 232
           S Q + +R STE   P GT
Sbjct: 534 SGQTSVQRASTEFGIPTGT 552


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -2

Query: 221 TDYSEPRHRTELYPDLRSRDARVKKKTDSIDL 126
           T  SE    + L+P L SRD    ++ ++++L
Sbjct: 407 TSASELVESSVLFPSLDSRDELHPRELEAVNL 438


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 245 PRQERKSSTDYSEPRHRTELYPD 177
           PR+ R+  T+Y E R++ + + +
Sbjct: 405 PREMRQRITEYFEHRYQGKFFDE 427


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 14/66 (21%), Positives = 25/66 (37%)
 Frame = -2

Query: 287 LNRSQHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSIDLRDPNGL 108
           LN  +   + P   PR++            +++  P   +R       + S+DL    GL
Sbjct: 327 LNFQEERRSEPVEPPRRKNNCPLHCKPELGQSQSSPKFVARREESNSSSPSLDLGKEGGL 386

Query: 107 RRRVSR 90
             + SR
Sbjct: 387 EAQWSR 392


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 7/23 (30%), Positives = 15/23 (65%)
 Frame = -2

Query: 245 PRQERKSSTDYSEPRHRTELYPD 177
           PR+ R+  T+Y E R++ + + +
Sbjct: 373 PREMRQRITEYFEHRYQGKFFDE 395


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 7/16 (43%), Positives = 12/16 (75%)
 Frame = -3

Query: 238 RNGSRLQTIPSPDIEL 191
           RNG+ L+T+  P+I +
Sbjct: 346 RNGADLETLNEPEIRV 361


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 5.7
 Identities = 9/39 (23%), Positives = 18/39 (46%)
 Frame = -2

Query: 245  PRQERKSSTDYSEPRHRTELYPDLRSRDARVKKKTDSID 129
            P+Q+++      + + +   YPDL +  A    K  + D
Sbjct: 1450 PQQQQQQQQQQQQQQQQLNHYPDLHNLYAVPTDKKSACD 1488



 Score = 20.2 bits (40), Expect = 7.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +1

Query: 58   CDFTSRVSHSKRETRRRSP 114
            CD    V HS ++T+++ P
Sbjct: 1487 CDSKLIVDHSSQKTQQQQP 1505


>AJ276511-1|CAC06383.1|  352|Apis mellifera Antennapedia protein
           protein.
          Length = 352

 Score = 20.2 bits (40), Expect = 7.5
 Identities = 10/40 (25%), Positives = 19/40 (47%)
 Frame = -2

Query: 275 QHDAALPSTTPRQERKSSTDYSEPRHRTELYPDLRSRDAR 156
           QH   + S   +Q++ +    +     + LYP +RS+  R
Sbjct: 231 QHQGVVTSPLSQQQQAAPQGAASANLPSPLYPWMRSQFER 270


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 19.8 bits (39), Expect = 9.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +3

Query: 126 EIDAIGFFLNTCITAPKVRI*LSSMSGLGIVCRRL 230
           E+D IG+  N   T     +  SS SG+ +   RL
Sbjct: 207 EVDVIGYTSNQSDTDDHSSVQSSSDSGVTMSTSRL 241


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 90,637
Number of Sequences: 438
Number of extensions: 1647
Number of successful extensions: 13
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  8184330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)