Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28p23
         (408 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_01_0459 + 3546101-3548771,3548871-3549238                           33   0.087
05_03_0041 - 7662094-7662138,7662269-7662340,7663144-7663179,766...    28   2.5  
08_02_1129 - 24513568-24514296,24515380-24515817                       28   3.3  
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657           28   3.3  
02_01_0422 - 3084940-3087072                                           27   4.3  
02_01_0417 - 3048519-3048710,3048903-3050600,3050622-3050909,305...    27   7.6  

>11_01_0459 + 3546101-3548771,3548871-3549238
          Length = 1012

 Score = 33.1 bits (72), Expect = 0.087
 Identities = 19/48 (39%), Positives = 26/48 (54%)
 Frame = +3

Query: 105 NAINLRDR*IDFSSIYFTGFVLWILSSFQRRLWLRSKGSQLHSIKDTD 248
           NA NLR+  +D SS  FTG V   +    +  WL  +G+QL + K  D
Sbjct: 286 NASNLRE--LDISSNNFTGVVPSSIGKLSKLYWLSLEGNQLQTHKKED 331


>05_03_0041 -
           7662094-7662138,7662269-7662340,7663144-7663179,
           7663356-7663449,7663533-7663681,7664525-7664864,
           7666417-7666748,7667348-7667821
          Length = 513

 Score = 28.3 bits (60), Expect = 2.5
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = -3

Query: 349 LKIAQEGIYTVLNLGQVKTTIHPMFFSRSMKRY 251
           + I+Q+G+YT +    + T  H  F S  M+RY
Sbjct: 238 IDISQQGVYTTVIGSHISTIYHYGFASLMMRRY 270


>08_02_1129 - 24513568-24514296,24515380-24515817
          Length = 388

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 16/44 (36%), Positives = 22/44 (50%)
 Frame = +1

Query: 262 YYD*KTLGELWF*PDRDSKPCIYPPVLFLDDLLIVYEDEENIDI 393
           Y D  +L  LW  P RD+  C  PP +   DL +   +EE  D+
Sbjct: 53  YSDPDSLVSLWG-PKRDTSRCRIPPCMIEYDLKMKRGEEEQDDL 95


>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
          Length = 1136

 Score = 27.9 bits (59), Expect = 3.3
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 184  PFNDDFGSGVKDRSYIRLRIPINNVSYYD*KTLGE 288
            P +D+FG  V  R Y+++ +P N  +  D + L E
Sbjct: 1033 PTDDEFGEAVGLRKYVQMALPDNAANVLDQQLLPE 1067


>02_01_0422 - 3084940-3087072
          Length = 710

 Score = 27.5 bits (58), Expect = 4.3
 Identities = 12/33 (36%), Positives = 19/33 (57%)
 Frame = +3

Query: 132 IDFSSIYFTGFVLWILSSFQRRLWLRSKGSQLH 230
           +DF+S +FTG +   + S     WLR   ++LH
Sbjct: 343 LDFASNHFTGKIPESIYSCSNLTWLRLSSNRLH 375


>02_01_0417 -
           3048519-3048710,3048903-3050600,3050622-3050909,
           3052308-3052377,3052417-3052668,3053235-3055297
          Length = 1520

 Score = 26.6 bits (56), Expect = 7.6
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 132 IDFSSIYFTGFVLWILSSFQRRLWLRSKGSQLH 230
           IDF S  FTG +   + S     WLR   ++LH
Sbjct: 354 IDFGSNNFTGTIPESIYSCSNLTWLRLSSNRLH 386


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,690,043
Number of Sequences: 37544
Number of extensions: 146137
Number of successful extensions: 238
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 235
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 238
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 718652880
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)