Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28p22
         (533 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces...    28   0.76 
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy...    28   0.76 
SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyce...    27   2.3  
SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cu...    26   3.1  
SPAC3A11.05c |kms1||meiotic spindle pole body protein Kms1|Schiz...    26   4.1  
SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces...    25   7.1  

>SPAC1834.08 |mak1|phk3|histidine kinase Mak1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1639

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 13/33 (39%), Positives = 21/33 (63%)
 Frame = -2

Query: 523 DFYSSLFTRTGNYY*IANQRYANYIYFFVRRQI 425
           D+ SSLF+ +G Y+ I  QR+ N   +F+ R +
Sbjct: 778 DWKSSLFSGSGFYHEIRLQRFDNVYRYFICRAV 810


>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 656

 Score = 28.3 bits (60), Expect = 0.76
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = -3

Query: 87  HRETGSSSRNEARLPNNILSNEIKTKINY 1
           H+   + S +E+ LPNN+  N   T +NY
Sbjct: 44  HKPKLNISPSESNLPNNVAENTTDTPVNY 72


>SPCC23B6.04c |||sec14 cytosolic factor family|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1008

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = -3

Query: 165 PNLSNIRTKLTANSDARCGRTNRAALHRETGSSSRNEARLPNNI 34
           P   N+ T  T+N   +        +H +TGSSS   +++ N +
Sbjct: 55  PARPNVSTSSTSNEVRKSVPVGNPTVHTKTGSSSSPASKMRNTV 98


>SPAC31A2.11c |cuf1||Cu metalloregulatory transcription factor Cuf1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -3

Query: 297 DYLQIKIHLSS*STNLILIHQKKKPHSQSYK 205
           D + +KI+L S +  + +  Q ++PHS+SY+
Sbjct: 121 DVMPLKINLESQTDFMGMPLQSQRPHSESYR 151


>SPAC3A11.05c |kms1||meiotic spindle pole body protein
           Kms1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 607

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/33 (33%), Positives = 17/33 (51%)
 Frame = -3

Query: 111 GRTNRAALHRETGSSSRNEARLPNNILSNEIKT 13
           G+ N          S  NE+++ NN  +N+IKT
Sbjct: 224 GKVNELTHQLNMADSKYNESKVANNSQNNQIKT 256


>SPBC15D4.10c |amo1||nuclear rim protein Amo1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 475

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 15/54 (27%), Positives = 23/54 (42%)
 Frame = -3

Query: 180 RLYALPNLSNIRTKLTANSDARCGRTNRAALHRETGSSSRNEARLPNNILSNEI 19
           +L    N  +I  K T+NS     + N+   +    S S N     NN  +N+I
Sbjct: 153 KLVGKTNYKSIFDKSTSNSTVTSNQFNKPTQNSPFNSFSNNNNSFNNNQQANDI 206


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,906,973
Number of Sequences: 5004
Number of extensions: 35368
Number of successful extensions: 69
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)