Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28p22
         (533 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0434 - 3302926-3303072,3303402-3303545,3303644-3304293,330...    29   3.1  
04_04_0179 - 23342764-23342973,23343185-23343340,23343535-233435...    28   4.1  
06_01_0619 - 4501296-4501561,4501664-4501784,4501915-4502253,450...    27   7.2  

>07_01_0434 -
           3302926-3303072,3303402-3303545,3303644-3304293,
           3304410-3304493,3304651-3304703,3305127-3305197,
           3305285-3305362,3305775-3305903,3305988-3306044,
           3306693-3306923,3307748-3307882,3308609-3308684,
           3308768-3309024,3309095-3309202,3309328-3309526,
           3309600-3309604
          Length = 807

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 2/50 (4%)
 Frame = -3

Query: 165 PNLSNIR--TKLTANSDARCGRTNRAALHRETGSSSRNEARLPNNILSNE 22
           P+ S +R   KL ++S A    T++ ++     SSS+N    P+ ILSN+
Sbjct: 631 PSASPLRPENKLQSSSRATTSSTSQRSVDNSQPSSSQNVMENPHEILSNQ 680


>04_04_0179 -
           23342764-23342973,23343185-23343340,23343535-23343593,
           23344150-23344226,23344309-23344587,23344800-23344885,
           23344960-23345027,23345721-23345904,23346071-23346204,
           23346776-23347039,23347613-23347677,23347833-23348407,
           23348501-23348680,23348765-23348928,23349008-23349261,
           23349405-23349562,23349808-23349948,23350176-23350282,
           23350651-23350737,23350812-23350901,23350974-23351055,
           23351370-23351561,23351748-23351816,23351959-23352294,
           23352694-23352837,23352963-23353126,23353817-23353883
          Length = 1463

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = -3

Query: 171 ALPNLSNIRTKLTANSDARCGRTNRAALHRETGSSSRNEARLPNNI 34
           A P++    TK   +S  +  +      ++ TG+  R+EA++P NI
Sbjct: 855 AKPSVRESMTKTRLDSATKPPQKEEQTANKNTGTRVRSEAKIPRNI 900


>06_01_0619 -
           4501296-4501561,4501664-4501784,4501915-4502253,
           4502290-4502327,4502673-4502757,4502840-4503093,
           4503868-4503961
          Length = 398

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -3

Query: 108 RTNRAALHRETGSSSRNEARLPNNILSNEIKTKIN 4
           +  +  L+ E G  +R++ +LP N + NE   +IN
Sbjct: 3   KLKKTGLNWELGFKTRSKTQLPQNFMHNEETERIN 37


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,934,696
Number of Sequences: 37544
Number of extensions: 183131
Number of successful extensions: 382
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 378
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 382
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1190246000
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)