Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28p22
         (533 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF069739-1|AAC63272.2|  690|Apis mellifera translation initiatio...    22   3.4  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.0  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    21   7.9  
EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate c...    21   7.9  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    21   7.9  

>AF069739-1|AAC63272.2|  690|Apis mellifera translation initiation
           factor 2 protein.
          Length = 690

 Score = 22.2 bits (45), Expect = 3.4
 Identities = 14/34 (41%), Positives = 20/34 (58%), Gaps = 2/34 (5%)
 Frame = -2

Query: 280 DSFK*LIYKFNFNTSKK-KTPQSKL*VQF-LYNV 185
           ++FK +IY FN N +K+ K   +K  V    YNV
Sbjct: 528 NTFKAIIYGFNVNATKQIKDEANKKGVSLRFYNV 561


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.0
 Identities = 16/67 (23%), Positives = 25/67 (37%)
 Frame = -3

Query: 243 IHQKKKPHSQSYKCSFCTT*IRLYALPNLSNIRTKLTANSDARCGRTNRAALHRETGSSS 64
           +H +       YK   C T  RL     LS  + +L         R    ++    G S+
Sbjct: 165 LHIRDVGPEDGYKTYQCRTKHRLTGETRLSATKGRLVITEPVGSVRPKFPSMDNINGLST 224

Query: 63  RNEARLP 43
            ++A LP
Sbjct: 225 ESKADLP 231


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/26 (23%), Positives = 16/26 (61%)
 Frame = -2

Query: 454 YIYFFVRRQISAHAAHARHETLLLDI 377
           Y Y+F+ + ++AH  + R +   +++
Sbjct: 234 YSYWFIIQAVAAHEKNMREQAKKMNV 259


>EF051030-1|ABN05618.1|  118|Apis mellifera phosphoenolpyruvate
           carboxykinase protein.
          Length = 118

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 177 LYALPNLSNIRTKLTANSDARCGRTNRAAL 88
           + A+ N    +  +TA   + CG+TN A +
Sbjct: 1   ILAITNPKGKKRYITAAFPSACGKTNLAMM 30


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 6/26 (23%), Positives = 16/26 (61%)
 Frame = -2

Query: 454 YIYFFVRRQISAHAAHARHETLLLDI 377
           Y Y+F+ + ++AH  + R +   +++
Sbjct: 110 YSYWFIIQAVAAHEKNMREQAKKMNV 135


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,390
Number of Sequences: 438
Number of extensions: 3140
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15090993
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)