Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28p19
         (578 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase Ade2|Sc...    27   2.6  
SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr...    26   3.5  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    25   6.1  
SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharom...    25   6.1  

>SPAC144.03 |ade2|min10, min3|adenylosuccinate synthetase
           Ade2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 434

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = +3

Query: 267 ASRQG-RVHTIYTWRSIQARSSTNHIHLAQHRRAQQSD-QVQAVKY 398
           A+R G RVH +Y W   +AR   N   L +   A + D + + ++Y
Sbjct: 154 ATRSGIRVHHLYHWAEFEARYRKNVADLQKRYGAFEYDVEAELIRY 199


>SPAC23H3.12c |||conserved protein |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 226

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = +1

Query: 187 MNSLIGDPDVINRYK 231
           +N+LIG PD ++RYK
Sbjct: 198 LNALIGHPDFVDRYK 212


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 10/21 (47%), Positives = 16/21 (76%)
 Frame = +2

Query: 263 RSIQTRSSTYYIHLAQHSGKI 325
           RS+QT+ ST  +H+A+ + KI
Sbjct: 725 RSVQTKFSTDSLHIAKRAAKI 745


>SPBC211.03c |||guanyl-nucleotide exchange factor|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1462

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 15/26 (57%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = -3

Query: 480  NQNTSLSLSENTKIKNKISSV--LSN 409
            N +TSL   ENT   NK+SSV  LSN
Sbjct: 1010 NPSTSLLTDENTVDDNKVSSVEALSN 1035


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,068,517
Number of Sequences: 5004
Number of extensions: 39110
Number of successful extensions: 69
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 65
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 248115846
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)