Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28p19
         (578 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782           29   2.7  
07_03_1778 + 29451902-29452166,29452665-29452849,29453504-294536...    28   4.7  
05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722     28   4.7  
02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657           27   8.2  

>10_01_0180 - 2037656-2037858,2038517-2038579,2038909-2039782
          Length = 379

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/49 (36%), Positives = 23/49 (46%)
 Frame = +1

Query: 223 RYK*RSSTNRIHLAQHPDKVEYILYTPGAAFRQDRLQTIYTWRSIAAHS 369
           R + R+ T  + L  H D V +  Y  G A +  RLQT   W  I A S
Sbjct: 84  RRRSRAETAVLRLCAHGDHVVFYGYLTGDANQVQRLQTTRHWACIDALS 132


>07_03_1778 +
           29451902-29452166,29452665-29452849,29453504-29453693,
           29453990-29454168,29454263-29454314,29454426-29454553,
           29454920-29455099,29455209-29455276,29455364-29455506,
           29455682-29455743,29455874-29455987,29456180-29456320,
           29456680-29456832,29456973-29457026,29457102-29457212,
           29457339-29457512,29457600-29457680,29457788-29457886,
           29457905-29458057
          Length = 843

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +3

Query: 258 PGAASRQGRVHTIYTWRSIQARSSTNHIHLAQH 356
           PG AS+ G    + +   I+++S+T  +H AQH
Sbjct: 156 PGKASQNGDTKPVPSTNMIRSQSATGSLHGAQH 188


>05_05_0033 + 21737075-21737721,21737819-21738134,21738463-21739722
          Length = 740

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/33 (39%), Positives = 17/33 (51%)
 Frame = +3

Query: 342 HLAQHRRAQQSDQVQAVKYLVRHSTTRNLFYFL 440
           H +Q RR QQ  Q++      RHS  R  FY +
Sbjct: 161 HESQRRRQQQQQQLKGRHLRPRHSHRRGYFYLV 193


>02_02_0062 - 6476019-6476419,6476624-6476960,6476985-6479657
          Length = 1136

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 17/47 (36%), Positives = 23/47 (48%)
 Frame = -3

Query: 471 TSLSLSENTKIKNKISSVLSNAAPDI*PLVLDHSAVRGDAAPSVYGL 331
           TSL LS+N  I   I   L N    +  L LD++ + G   PS+  L
Sbjct: 320 TSLDLSQNNLISGSIPDSLGNLGA-LSSLRLDYNKLEGSFPPSLLNL 365


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,796,452
Number of Sequences: 37544
Number of extensions: 233607
Number of successful extensions: 509
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 493
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 506
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1352600424
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)