Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28p19
         (578 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.0  
AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cycl...    22   5.0  
DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization prot...    21   8.8  
DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protei...    21   8.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    21   8.8  
AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein...    21   8.8  

>AY769960-1|AAV34676.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -1

Query: 437 KIK*VPCCRM-P-HQIFNRLYLITLLCAAMLRQVYMVCRRSC 318
           K+  +  CR+ P H +FNR  +I      + R +  VC  +C
Sbjct: 205 KVSPMTFCRVFPFHLMFNRDLIIVQTGCTITRVIPQVCSGNC 246


>AB181489-1|BAD22772.1|  603|Apis mellifera soluble guanylyl cyclase
           beta 1 subunit protein.
          Length = 603

 Score = 21.8 bits (44), Expect = 5.0
 Identities = 13/42 (30%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = -1

Query: 437 KIK*VPCCRM-P-HQIFNRLYLITLLCAAMLRQVYMVCRRSC 318
           K+  +  CR+ P H +FNR  +I      + R +  VC  +C
Sbjct: 205 KVSPMTFCRVFPFHLMFNRDLIIVQTGCTITRVIPQVCSGNC 246


>DQ666693-1|ABG29167.1|  250|Apis mellifera MAX dimerization protein
           protein.
          Length = 250

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 10/27 (37%), Positives = 16/27 (59%)
 Frame = +3

Query: 324 SSTNHIHLAQHRRAQQSDQVQAVKYLV 404
           S T H  L ++RRA   + ++ +K LV
Sbjct: 49  SRTTHNELEKNRRAHLRNCLEKLKVLV 75


>DQ257631-1|ABB82366.1|  424|Apis mellifera yellow e3-like protein
           protein.
          Length = 424

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 5/13 (38%), Positives = 12/13 (92%)
 Frame = +1

Query: 319 QDRLQTIYTWRSI 357
           Q++L+ IY+W+++
Sbjct: 21  QEKLKNIYSWKAL 33


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 6/12 (50%), Positives = 10/12 (83%)
 Frame = +2

Query: 302 LAQHSGKIVYKP 337
           +  H+GK+V+KP
Sbjct: 126 ILHHTGKVVWKP 137


>AY661557-1|AAT74557.1|  411|Apis mellifera yellow-f-like protein
           protein.
          Length = 411

 Score = 21.0 bits (42), Expect = 8.8
 Identities = 5/17 (29%), Positives = 12/17 (70%)
 Frame = +2

Query: 224 VTNRDRVQTVYTWRSIQ 274
           + N + ++T+Y+W  I+
Sbjct: 12  LANGEEIKTIYSWNVIE 28


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 141,764
Number of Sequences: 438
Number of extensions: 2878
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16748661
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)