Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28p17
(496 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0588 - 18789971-18790000,18790334-18790507,18791470-187919... 31 0.67
12_02_0992 + 25083397-25083537,25084198-25084228,25084971-250851... 29 2.7
01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138 29 2.7
02_05_0665 - 30720842-30721003,30721290-30721448,30721555-307216... 28 3.6
08_02_0611 + 19317969-19318778 28 4.7
06_01_1133 + 9364842-9364850,9364929-9365048,9365157-9365476,936... 28 4.7
01_01_0753 - 5814087-5814344,5814461-5814646,5814847-5815004,581... 28 4.7
09_04_0350 + 16899076-16900164 27 8.3
06_01_0495 - 3546131-3547588 27 8.3
03_05_0383 + 23656041-23656096,23657189-23657255,23657599-236577... 27 8.3
>09_04_0588 -
18789971-18790000,18790334-18790507,18791470-18791954,
18792912-18793266
Length = 347
Score = 30.7 bits (66), Expect = 0.67
Identities = 10/20 (50%), Positives = 13/20 (65%)
Frame = +2
Query: 125 FSFDCGDCDLCVNPCCLALS 184
FSF C C ++PCC A+S
Sbjct: 136 FSFRCTSCSFAMHPCCAAMS 155
>12_02_0992 +
25083397-25083537,25084198-25084228,25084971-25085139,
25085228-25085291,25085408-25085474,25086543-25086586,
25086835-25086922,25087079-25087238,25087659-25087779,
25087859-25087942,25088043-25088162,25088689-25088901,
25088995-25089054,25089144-25089262,25089407-25089465,
25089585-25089919
Length = 624
Score = 28.7 bits (61), Expect = 2.7
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 482 ECSNSNRVDTRYCNPFFRNDQWLFIG-TMAVEDNLDILVAGVEGNRDSLRLVVEGRDI 312
EC NS+ +DT C + + Q F G M VE + IL+ + ++L G +
Sbjct: 381 ECLNSSIMDTPECQQLYMDIQEFFEGLNMKVEQQVPILLVERQALNEALETEKNGHHL 438
>01_01_0157 + 1367891-1367950,1368147-1368272,1372590-1373138
Length = 244
Score = 28.7 bits (61), Expect = 2.7
Identities = 13/43 (30%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Frame = +2
Query: 104 NRRMGLCFSFDCGDCDLCVNPCCLAL-SACCLIPCLCPNA-CG 226
+++ + D DC +C P + AC PC CP++ CG
Sbjct: 35 DKKQVVTIGMDVLDCPVCFEPFKPPIFQACSYEPCFCPDSGCG 77
>02_05_0665 -
30720842-30721003,30721290-30721448,30721555-30721687,
30722042-30722227,30722377-30722906
Length = 389
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/49 (28%), Positives = 26/49 (53%), Gaps = 2/49 (4%)
Frame = +2
Query: 68 ILKYFITVIKPNNRRMGLCF-SFDCGDCDLCVNPCC-LALSACCLIPCL 208
I YF+ +++ N + + F +FD CV C + ++ CC +PC+
Sbjct: 226 ITDYFM-IVQSNVHMLSVVFLAFDVFFAVFCVAMACFIGIALCCCLPCV 273
>08_02_0611 + 19317969-19318778
Length = 269
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/19 (52%), Positives = 13/19 (68%)
Frame = +2
Query: 125 FSFDCGDCDLCVNPCCLAL 181
F F C D DL ++PCC +L
Sbjct: 105 FVFHCADRDLDLHPCCASL 123
>06_01_1133 +
9364842-9364850,9364929-9365048,9365157-9365476,
9366267-9366428,9367151-9367235,9367352-9367501,
9367588-9367635,9367705-9367773,9367897-9368600,
9369426-9369561,9369636-9369856,9370355-9370486,
9371316-9371406,9371878-9371925,9372004-9372132,
9372357-9372626
Length = 897
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/30 (40%), Positives = 12/30 (40%), Gaps = 1/30 (3%)
Frame = +2
Query: 137 CGDCDLCVNPC-CLALSACCLIPCLCPNAC 223
CG C C CL CC C CP C
Sbjct: 651 CGCQSACGKQCPCLTNGTCCEKYCGCPKMC 680
>01_01_0753 -
5814087-5814344,5814461-5814646,5814847-5815004,
5815082-5815214,5815299-5815489,5815826-5816281,
5816543-5816661,5816729-5816872,5816994-5817065,
5817368-5817500,5817598-5817733
Length = 661
Score = 27.9 bits (59), Expect = 4.7
Identities = 10/21 (47%), Positives = 15/21 (71%)
Frame = -1
Query: 370 LLVWRVTGIASVWWWRVGISG 308
+LVWR G A++ W+ G+SG
Sbjct: 325 ILVWRKRGRAAIGPWKTGLSG 345
>09_04_0350 + 16899076-16900164
Length = 362
Score = 27.1 bits (57), Expect = 8.3
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = -1
Query: 400 WRLRITWISWLLVWRVTGIASVWWWR 323
WRL +T +SW V V + + WW++
Sbjct: 146 WRL-VTGLSWAAVVLVVVVTASWWFK 170
>06_01_0495 - 3546131-3547588
Length = 485
Score = 27.1 bits (57), Expect = 8.3
Identities = 12/41 (29%), Positives = 22/41 (53%)
Frame = -1
Query: 196 QTTSAQC*TAGVYTQVTIPTVE*KTETHPPVIRFYNCNEIF 74
+T ++ C G+Y +P+ + T P ++RF C+E F
Sbjct: 299 KTKTSPCILGGIYWIAALPSPSTGSCTTPGIVRFDVCSEEF 339
>03_05_0383 +
23656041-23656096,23657189-23657255,23657599-23657745,
23658094-23658178,23658380-23658551,23660056-23660176,
23660431-23660550,23660861-23661073,23661154-23661213,
23661306-23661424,23661609-23661667,23661798-23662132
Length = 517
Score = 27.1 bits (57), Expect = 8.3
Identities = 13/39 (33%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = -3
Query: 482 ECSNSNRVDTRYCNPFFRNDQWLFIG-TMAVEDNLDILV 369
EC N++ +DT C P + + Q + G M VE + +L+
Sbjct: 274 ECLNTSIMDTDECQPLYIDIQEFYEGLNMKVEQQIPLLL 312
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,586,957
Number of Sequences: 37544
Number of extensions: 223607
Number of successful extensions: 665
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 664
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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