Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28p08
         (360 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75547-12|CAN99725.1|  141|Caenorhabditis elegans Hypothetical p...    30   0.42 
AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical ...    28   1.7  
AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical ...    27   3.0  
AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical ...    27   3.0  
Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical pr...    27   3.9  
Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical pr...    27   5.2  
U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical pr...    27   5.2  
AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain pro...    26   6.9  
AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain pro...    26   6.9  
Z81118-1|CAB03329.1|  478|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z78065-1|CAD54154.1|  547|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z75549-4|CAA99919.2|  304|Caenorhabditis elegans Hypothetical pr...    26   9.1  
Z22178-2|CAA80154.1|  261|Caenorhabditis elegans Hypothetical pr...    26   9.1  
U29377-3|AAA68720.2|  472|Caenorhabditis elegans Hypothetical pr...    26   9.1  
AL110500-7|CAB54490.1|  489|Caenorhabditis elegans Hypothetical ...    26   9.1  
AJ000537-1|CAA04170.1|  478|Caenorhabditis elegans GluClalpha2B ...    26   9.1  
AF101316-2|AAC69230.1|  692|Caenorhabditis elegans Hypothetical ...    26   9.1  

>Z75547-12|CAN99725.1|  141|Caenorhabditis elegans Hypothetical
           protein K10C8.3b protein.
          Length = 141

 Score = 30.3 bits (65), Expect = 0.42
 Identities = 14/59 (23%), Positives = 26/59 (44%)
 Frame = -1

Query: 333 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPSRPVWSRRSPHH 157
           R  S+ ++  +  +RP + R ++ P P       R RS +   + K +  V     P+H
Sbjct: 17  RKKSKSVKRCSSCKRPNSTRRSKTPDPNSEKEKVRNRSGSSSKKEKKNSLVNPNLQPNH 75


>AL031635-5|CAA21042.1| 1113|Caenorhabditis elegans Hypothetical
           protein Y47D3B.7 protein.
          Length = 1113

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 1/56 (1%)
 Frame = -3

Query: 316 HQDHHRGPAPRHSEKHSASEA-DRAERLLPGALRDAPSPE*TFSTCLVSTESTPFP 152
           +  HH+ P P H   H   +  +  E++   ++ DAP    T  T LV  +S   P
Sbjct: 220 YSQHHQSPPPHHHHHHPMPKIHENPEQVASPSIEDAPE---TKPTHLVEPQSPKSP 272


>AL031632-7|CAA21009.2| 1528|Caenorhabditis elegans Hypothetical
           protein Y32B12B.4 protein.
          Length = 1528

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = -3

Query: 304 HRGPAPRHSEKHSASEADRAERLLPGALRDAPSPE 200
           H GP     E+H  +E D  E LL G L D P  +
Sbjct: 258 HSGPVAMKMEEHEETEEDFLE-LLNGTLDDVPDSD 291


>AC084156-1|AAK68491.2|  466|Caenorhabditis elegans Hypothetical
           protein Y46E12BL.4 protein.
          Length = 466

 Score = 27.5 bits (58), Expect = 3.0
 Identities = 17/46 (36%), Positives = 19/46 (41%)
 Frame = -3

Query: 349 PLRAVQSREQGHQDHHRGPAPRHSEKHSASEADRAERLLPGALRDA 212
           PLR   S  Q H  H R P   HS  +      R E   P AL+ A
Sbjct: 309 PLRPPPSSLQHHHHHRRSPPLFHSPVYKPKPRSRTES--PAALKAA 352


>Z92815-4|CAB07294.2| 2175|Caenorhabditis elegans Hypothetical
           protein W01F3.3 protein.
          Length = 2175

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 309 TTTEARRPGTARNTRRPKPTELSACCRERSETP 211
           TTT  +RP T   T  P+P E     +E++E P
Sbjct: 163 TTTTTKRPPTTTTTEDPQPFEFHE-LQEQAENP 194


>Z75541-4|CAA99858.1|  146|Caenorhabditis elegans Hypothetical
           protein F52B5.6 protein.
          Length = 146

 Score = 27.1 bits (57), Expect = 3.9
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = -1

Query: 327 VSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSET 214
           V +++RT+   RRP T    R P+    SA  R++ ++
Sbjct: 26  VRKNVRTSVHFRRPKTLVTARAPRYARKSAPARDKLDS 63


>Z81518-1|CAB04214.3|  601|Caenorhabditis elegans Hypothetical
           protein F28D9.1 protein.
          Length = 601

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 16/48 (33%), Positives = 20/48 (41%)
 Frame = -1

Query: 333 RAVSRDIRTTTEARRPGTARNTRRPKPTELSACCRERSETPRHRNKPS 190
           RA SR       ARR  +   ++ P P    A  R +S   R R  PS
Sbjct: 333 RAKSRSKSPPAPARRRRSPSASKSPPPAPKRAKSRSKSPPARRRRSPS 380


>U67953-4|AAL13329.1|  732|Caenorhabditis elegans Hypothetical
           protein ZC13.3 protein.
          Length = 732

 Score = 26.6 bits (56), Expect = 5.2
 Identities = 9/16 (56%), Positives = 13/16 (81%)
 Frame = -1

Query: 291 RPGTARNTRRPKPTEL 244
           RP T + T++PKPTE+
Sbjct: 189 RPWTVKQTKKPKPTEV 204


>AC024847-5|AAN73850.1|  792|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform b
           protein.
          Length = 792

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 330 AVSRDIRTTTEARRPGTARNTRRPKPTELSA 238
           + S  + T++ ARRP TA+      PT  +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAA 202


>AC024847-4|AAN73849.1|  794|Caenorhabditis elegans Ww domain
           protein (e3 ubiquitinligase) protein 1, isoform a
           protein.
          Length = 794

 Score = 26.2 bits (55), Expect = 6.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)
 Frame = -1

Query: 330 AVSRDIRTTTEARRPGTARNTRRPKPTELSA 238
           + S  + T++ ARRP TA+      PT  +A
Sbjct: 172 STSNGVATSSSARRPATAKRDTLAAPTSTAA 202


>Z81118-1|CAB03329.1|  478|Caenorhabditis elegans Hypothetical
           protein R11G10.1b protein.
          Length = 478

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 316 HQDHHRGPAPRHSEKHSASEADRAE 242
           H  H R  +  HS KH+AS +D  E
Sbjct: 19  HAYHSRPKSEEHSPKHAASSSDLFE 43


>Z79696-1|CAB01972.1| 1584|Caenorhabditis elegans Hypothetical
           protein F54F3.1 protein.
          Length = 1584

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3

Query: 340 AVQSREQGHQDHHRGPAPRHSEKHS 266
           A Q++EQ HQ HH+   P+   + S
Sbjct: 326 ARQAQEQHHQQHHQPDQPQQQPQRS 350


>Z78065-1|CAD54154.1|  547|Caenorhabditis elegans Hypothetical
           protein T09E8.1d protein.
          Length = 547

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/27 (44%), Positives = 13/27 (48%), Gaps = 1/27 (3%)
 Frame = -3

Query: 334 QSREQGHQDHHRGPAPRH-SEKHSASE 257
           Q+    H  HH  PAPRH S  H   E
Sbjct: 31  QNGNSHHHHHHLPPAPRHLSSSHHQIE 57


>Z75549-4|CAA99919.2|  304|Caenorhabditis elegans Hypothetical
           protein T19C4.4 protein.
          Length = 304

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +3

Query: 81  LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAP 230
           +R++ +T L+Q    + S+ +YYN N   +V         S DG SL  P
Sbjct: 218 IRIAFITCLVQACGTALSVIRYYNMNTSMAVTLANFIPFIS-DGLSLVQP 266


>Z22178-2|CAA80154.1|  261|Caenorhabditis elegans Hypothetical
           protein F54C8.2 protein.
          Length = 261

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/39 (35%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
 Frame = +3

Query: 174 ETKQVEKVYSGDGASLSAPGSKRSALSASDAECF-SLCL 287
           E  +   V   DG+SL +  SKR+ L+ +D + +  LCL
Sbjct: 220 EASEALLVQMFDGSSLISAHSKRATLTTTDVQLYRRLCL 258


>U29377-3|AAA68720.2|  472|Caenorhabditis elegans Hypothetical
           protein K05F1.5 protein.
          Length = 472

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 12/32 (37%), Positives = 15/32 (46%)
 Frame = -1

Query: 237 CCRERSETPRHRNKPSRPVWSRRSPHHFHCSI 142
           CC   S  P+  +  SRP    +   HFHC I
Sbjct: 97  CCPITS-LPKRLDSCSRPFCKLKKKAHFHCKI 127


>AL110500-7|CAB54490.1|  489|Caenorhabditis elegans Hypothetical
           protein Y87G2A.7 protein.
          Length = 489

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 14/51 (27%), Positives = 25/51 (49%)
 Frame = +3

Query: 81  LRLSKMTMLIQQLNCSSSISKYYNGNGVDSVETKQVEKVYSGDGASLSAPG 233
           ++LS+   L QQ+    S+ + Y    ++ V  KQ+ ++    GA    PG
Sbjct: 419 IKLSEQLYLDQQIKLICSLCQLYPVKMINKVAIKQLLELVVFAGADFEMPG 469


>AJ000537-1|CAA04170.1|  478|Caenorhabditis elegans GluClalpha2B
           protein protein.
          Length = 478

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = -3

Query: 316 HQDHHRGPAPRHSEKHSASEADRAE 242
           H  H R  +  HS KH+AS +D  E
Sbjct: 19  HAYHSRPKSEEHSPKHAASSSDLFE 43


>AF101316-2|AAC69230.1|  692|Caenorhabditis elegans Hypothetical
           protein F52F10.4 protein.
          Length = 692

 Score = 25.8 bits (54), Expect = 9.1
 Identities = 9/15 (60%), Positives = 13/15 (86%)
 Frame = -1

Query: 117 IVVLTSSSWRDVIKP 73
           I+  TS++W+DVIKP
Sbjct: 15  IIPTTSATWKDVIKP 29


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,430,014
Number of Sequences: 27780
Number of extensions: 171161
Number of successful extensions: 697
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 696
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 492763868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)