Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28p07
(521 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0200 - 14179389-14180488,14180575-14180736,14180983-141813... 30 1.3
01_02_0116 - 11252220-11253313,11253398-11253559,11253977-112543... 30 1.3
02_04_0240 - 21194597-21194743,21195579-21195680,21195797-211958... 29 1.7
02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704 28 5.2
11_01_0607 - 4837257-4837447,4837526-4837631,4837913-4838005,483... 27 9.1
09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957 27 9.1
04_04_0859 + 28805836-28805842,28806405-28806492,28807474-288075... 27 9.1
03_06_0412 + 33749039-33749077,33749585-33749728,33750110-337508... 27 9.1
>08_02_0200 -
14179389-14180488,14180575-14180736,14180983-14181383,
14182078-14182272,14182980-14183094,14183180-14183428,
14184032-14184093,14184335-14184435,14184701-14184815,
14185211-14185302,14187619-14187777
Length = 916
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 221 LKGSGSW*EQYQRTVGTIDSRWV 153
+KG W +YQR GTID W+
Sbjct: 701 VKGLDEWPNEYQRQYGTIDLYWI 723
>01_02_0116 -
11252220-11253313,11253398-11253559,11253977-11254306,
11254328-11254377,11255195-11255389,11255532-11255625,
11255713-11255961,11256831-11256892,11257434-11257534,
11257766-11257880,11258384-11258475,11259197-11259333,
11259721-11259760
Length = 906
Score = 29.9 bits (64), Expect = 1.3
Identities = 11/23 (47%), Positives = 14/23 (60%)
Frame = -1
Query: 221 LKGSGSW*EQYQRTVGTIDSRWV 153
+KG W +YQR GTID W+
Sbjct: 693 VKGLDEWPNEYQRQYGTIDLYWI 715
>02_04_0240 -
21194597-21194743,21195579-21195680,21195797-21195875,
21195921-21196043,21196135-21196193,21196453-21196974,
21197434-21198177,21198426-21198506
Length = 618
Score = 29.5 bits (63), Expect = 1.7
Identities = 35/130 (26%), Positives = 55/130 (42%)
Frame = +3
Query: 120 SIPAWSKLKYSYPS*INGSNSALVLFSPTTTTFQLLPVSMENSTILHTVALSLDLPVAVS 299
S+P + K S+ S + SNS F + ++P S + ++ LHT +SL VS
Sbjct: 400 SLPRAAVNKGSHVSHVALSNSTTQKFVTSHPKHSVMPNSSQRASTLHTTQVSLKRSAGVS 459
Query: 300 PVKYLMFTLLLTIPNSLRRITTRM*ASYE*HMPSTSAQTSSRVLLSNKVS*YPRVFLLIC 479
V + ++ Y TSA +S+R S +S Y + +L
Sbjct: 460 SVNNRPQNKRKQLSTPSTWDENKLNRGY----ARTSAPSSAR---SISLSCYSGLDVLSS 512
Query: 480 SDGELPFKAA 509
S G LP+K A
Sbjct: 513 SVGILPYKTA 522
>02_05_0005 - 24890239-24891419,24891524-24891694,24891810-24892704
Length = 748
Score = 27.9 bits (59), Expect = 5.2
Identities = 16/37 (43%), Positives = 18/37 (48%)
Frame = +1
Query: 358 LRQGCEHRTSNTCHPLRPKHPAGCYYPTRCRNTPGYF 468
L GC+ N C R K+P C P C NTPG F
Sbjct: 293 LLDGCQD--INECEDSRFKYP--CSVPGTCINTPGGF 325
>11_01_0607 -
4837257-4837447,4837526-4837631,4837913-4838005,
4838405-4838542,4838651-4838778,4838889-4839049,
4839145-4839235,4841437-4841602
Length = 357
Score = 27.1 bits (57), Expect = 9.1
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +3
Query: 192 LFSPTTTTFQLLPVSMENSTILH-TVALSLDLPVAVSPVKYLMFTLL 329
LF P T F L+ + ++ I + AL VSP+ Y+MFT L
Sbjct: 203 LFYPQTWAFALIVATCVSTQINYLNKALDTFNTAVVSPIYYVMFTSL 249
>09_04_0477 - 17932797-17933974,17934454-17934612,17934693-17934957
Length = 533
Score = 27.1 bits (57), Expect = 9.1
Identities = 12/27 (44%), Positives = 12/27 (44%)
Frame = +1
Query: 436 PTRCRNTPGYFC*SARMGNYRSRRQCI 516
P C NT G F S GNY CI
Sbjct: 102 PGICNNTMGSFTCSCHQGNYMENGTCI 128
>04_04_0859 + 28805836-28805842,28806405-28806492,28807474-28807558,
28807638-28807763,28807819-28807968,28808497-28808541,
28808612-28808875,28809843-28809887,28810395-28810430,
28812048-28812816,28813063-28813925,28814024-28814182,
28814440-28814558,28815356-28815417,28816677-28816805,
28817395-28817460,28817757-28817890,28818025-28818162,
28818630-28818889,28818996-28819107,28819590-28819675,
28820655-28820735,28822841-28822928,28823222-28823260,
28823847-28823964,28824063-28824130,28824884-28824981,
28825238-28825397,28825691-28825816,28825876-28825945,
28826046-28826449
Length = 1664
Score = 27.1 bits (57), Expect = 9.1
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 478 QINKNTLGYYDTLLDNSTLLDVWAEVDGMC 389
+IN+N LGY LL + LDV A ++ C
Sbjct: 1575 EINRNELGYTHLLLASRLPLDVGAYLERTC 1604
>03_06_0412 +
33749039-33749077,33749585-33749728,33750110-33750862,
33750959-33751778,33751893-33752140,33752285-33752391,
33753098-33753248,33753339-33753530,33753905-33754042
Length = 863
Score = 27.1 bits (57), Expect = 9.1
Identities = 10/32 (31%), Positives = 15/32 (46%)
Frame = -3
Query: 507 PP*TVVPHPSRSTKIPWGITTPCWIIAPCWMF 412
PP + P + K +G WI+ P W+F
Sbjct: 660 PPIVLSPKKVSTAKFLYGCAINSWILNPSWLF 691
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,536,008
Number of Sequences: 37544
Number of extensions: 345762
Number of successful extensions: 916
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 915
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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