Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28o24
         (467 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.         23   1.2  
AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.           22   2.9  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   8.7  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             21   8.7  

>AY588474-1|AAT94401.1|  104|Apis mellifera defensin 2 protein.
          Length = 104

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 13/38 (34%), Positives = 15/38 (39%)
 Frame = +1

Query: 142 LKWRKRW**K*FCWSICRNR*HEIESKKGDCRRWFCIC 255
           L W+ +W       S C  R      K G CR   CIC
Sbjct: 67  LSWQSKW--LSINHSACAIRCLAQRRKGGSCRNGVCIC 102


>AJ308527-1|CAC33429.1|   57|Apis mellifera defensin protein.
          Length = 57

 Score = 22.2 bits (45), Expect = 2.9
 Identities = 8/24 (33%), Positives = 10/24 (41%)
 Frame = +1

Query: 184 SICRNR*HEIESKKGDCRRWFCIC 255
           S C    H +    G C +  CIC
Sbjct: 33  SACAANCHSLGKAGGHCEKGVCIC 56


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 6/12 (50%), Positives = 11/12 (91%)
 Frame = -3

Query: 339 MFLFACSSAAIN 304
           +FLFAC+++ +N
Sbjct: 301 LFLFACTNSCMN 312


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +2

Query: 131  GYFSSSGANGGSENDFVGQFVEIG 202
            G +  SGANG   ++ +   +E G
Sbjct: 1272 GIYDGSGANGSFLDNLIRSSLETG 1295


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,861
Number of Sequences: 438
Number of extensions: 2523
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)