Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28o23
         (595 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    66   5e-12
SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces po...    28   0.89 
SPAC139.03 |||transcription factor, zf-fungal binuclear cluster ...    26   4.8  
SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces po...    26   4.8  
SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyc...    26   4.8  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    26   4.8  
SPBC215.03c |csn1||COP9/signalosome complex subunit Csn1|Schizos...    25   6.3  
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    25   8.3  
SPBC776.12c |hsk1||serine/threonine protein kinase Hsk1|Schizosa...    25   8.3  
SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr 2...    25   8.3  
SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1 |Schizosaccharom...    25   8.3  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 65.7 bits (153), Expect = 5e-12
 Identities = 45/144 (31%), Positives = 73/144 (50%), Gaps = 7/144 (4%)
 Frame = +1

Query: 160 LNKCKVVSATSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELG 339
           LN    +S     + KFYST+S + +  E   SK    +  LNRPK LNA+   +   + 
Sbjct: 33  LNASSTMSRAFIRNPKFYSTSSNDTVLYE---SKNGARIFTLNRPKVLNAINVDMIDSIL 89

Query: 340 KAVNDFDADSNIAAIIIT-GNEKAFAAGADIKEMQNNTYSSN---TKQGFLREWE---DI 498
             +   + +SN+A +II  GN ++F++G DIK    +         +  F +E+     +
Sbjct: 90  PKLVSLE-ESNLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTL 148

Query: 499 SNCGKPIIAAVNGFALGGGCELAM 570
           +   KP++A +NG  +GGG  LAM
Sbjct: 149 ATYQKPVVALMNGITMGGGSGLAM 172


>SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 107

 Score = 28.3 bits (60), Expect = 0.89
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 120 CRYCNSCFA-GKECTEQVQSGIRNKPSIHKVL 212
           C+ CNS    GK C+ + +   R  PSI +VL
Sbjct: 59  CKGCNSLLVPGKSCSIRFEEPSRKNPSIDRVL 90


>SPAC139.03 |||transcription factor, zf-fungal binuclear cluster
           type |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 625

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -3

Query: 479 RKPCFVLLLYVLFCISLISAP 417
           RKP F  LLY ++  +L++ P
Sbjct: 228 RKPAFTSLLYAIYASALLATP 248


>SPBC16C6.10 |chp2||chromodomain protein 2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 380

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +1

Query: 430 KEMQNNTYSSNTKQGFLRE-WEDISNCGKPIIAAVNG 537
           K M+++  S N K  F ++ WED+ +C K +    NG
Sbjct: 304 KYMKSDKSSKNFKPPFQKKSWEDLVDCVKTVQQLDNG 340


>SPAP32A8.02 |||xylose and arabinose reductase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 283

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 26/96 (27%), Positives = 41/96 (42%), Gaps = 5/96 (5%)
 Frame = -2

Query: 585 DDIAQHCQLTTTSKSETINSGNDGLPTVGDVL-PFTKETLFCVAAVCIVLHL----LNIS 421
           DDI ++CQ    +  E  +    G+    + L P  K+    VA + I   L    + I 
Sbjct: 179 DDIVKYCQSHDIA-IEAYSPLTHGIRLNDEKLVPIAKKLNISVAQLLIRWSLQKGYIPII 237

Query: 420 TSRKRLLVTSDDDGSNVAVGVKIIDCLPEFDKQWFA 313
            S K+  + SD D  N  +   ++  L  FD+ W A
Sbjct: 238 KSTKKEHMLSDLDVFNFTIPDDVVQELSSFDEHWHA 273


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = -3

Query: 578 SHSIASSQPPPRAKPLTAAMMGFPQLEMSS 489
           S+S  SS   P A+PLTA  +GF   +  S
Sbjct: 268 SNSAQSSLFSPTARPLTARKLGFASSQTKS 297


>SPBC215.03c |csn1||COP9/signalosome complex subunit
           Csn1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 422

 Score = 25.4 bits (53), Expect = 6.3
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)
 Frame = +1

Query: 331 ELGKAVNDFDADSNI-AAIIITGNEK---AFAAGADIKEMQNNTYSSNTKQGFLREWED 495
           EL + ++++   S I  A+ +  N K   +F     IKE++  TY+    Q    E++D
Sbjct: 11  ELKRYLDEYGVWSKIFRALFVARNSKPLRSFCVHYAIKELKEKTYNLELYQSLFEEFQD 69


>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
 Frame = +1

Query: 442 NNTYSS--NTK-QGFLREWEDISNCGKPIIAAV 531
           NNT+ +  N K +G+++E E +SN  K + AAV
Sbjct: 85  NNTFQNPCNRKIEGYIKEIERLSNSNKNLQAAV 117


>SPBC776.12c |hsk1||serine/threonine protein kinase
           Hsk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/59 (27%), Positives = 27/59 (45%)
 Frame = +1

Query: 229 ENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVNDFDADSNIAAIIITGNEK 405
           ENI    V  ++N  LI+       +++ K   +  G+ +ND+D  S +      G EK
Sbjct: 55  ENITRTFVELQENYRLIEKIGEGTFSSVYKAEDLHYGRYINDWDIQSEVLKESSFGKEK 113


>SPBC365.06 |pmt3|ubl2, smt3|SUMO|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 117

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 16/55 (29%), Positives = 26/55 (47%)
 Frame = +1

Query: 187 TSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELGKAVN 351
           TSQ  +K     S E+I ++VVG   N    ++ +    + L K      GK++N
Sbjct: 24  TSQQDVK----PSTEHINLKVVGQDNNEVFFKIKKTTEFSKLMKIYCARQGKSMN 74


>SPAC9.05 |mfh1||ATP-dependent DNA helicase Mfh1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 834

 Score = 25.0 bits (52), Expect = 8.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 444 VLHLLNISTSRKRLLVTSDDDGSNVAVGVKIIDCL 340
           V+HLL++S    R+L  S   G+ +     +ID L
Sbjct: 210 VVHLLSLSNKNFRILALSATPGNKLEAIQNVIDSL 244


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,461,647
Number of Sequences: 5004
Number of extensions: 49344
Number of successful extensions: 142
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 258201856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)