Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28o16
(503 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 28 0.69
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me... 28 0.92
SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|c... 27 1.2
SPAC19A8.12 |dcp2||mRNA decapping complex subunit Dcp2|Schizosac... 26 2.8
SPBC20F10.06 |mad2||spindle checkpoint protein Mad2|Schizosaccha... 26 3.7
SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr 1||... 25 4.9
SPAC144.15c |cog1||Golgi transport complex subunit Cog1 |Schizos... 25 4.9
SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces... 25 6.5
SPCC594.02c |||conserved fungal protein|Schizosaccharomyces pomb... 25 6.5
SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces ... 25 6.5
SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+] |Schizosacc... 25 8.5
SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb... 25 8.5
>SPBC14F5.02 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 515
Score = 28.3 bits (60), Expect = 0.69
Identities = 13/42 (30%), Positives = 22/42 (52%)
Frame = -3
Query: 393 DAHCDNVQHQTDDPSTSSSLHSLGLPRTPSKLPIAQRKTSTF 268
D+ C+N++ T+++ SL P+TP KL I + F
Sbjct: 259 DSSCENIRILGFKAETNAATISLFAPKTPEKLQITLSSSDVF 300
>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
membrane translocase Oxa102|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 409
Score = 27.9 bits (59), Expect = 0.92
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -3
Query: 348 TSSSLHSLGLPRTPSKLPIAQRKTSTF 268
+S+ H LGLP PS +P+ + +F
Sbjct: 311 SSTIRHKLGLPEVPSAMPVPNAQNESF 337
>SPAC19B12.08 |||peptidase family C54|Schizosaccharomyces pombe|chr
1|||Manual
Length = 320
Score = 27.5 bits (58), Expect = 1.2
Identities = 13/36 (36%), Positives = 18/36 (50%), Gaps = 1/36 (2%)
Frame = -3
Query: 417 RHDQTACY-DAHCDNVQHQTDDPSTSSSLHSLGLPR 313
R +Q Y D HC + H T P++ + HS L R
Sbjct: 223 RQNQYFFYLDPHCTHFAHTTTQPASEETFHSATLRR 258
>SPAC19A8.12 |dcp2||mRNA decapping complex subunit
Dcp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 741
Score = 26.2 bits (55), Expect = 2.8
Identities = 12/23 (52%), Positives = 15/23 (65%)
Frame = -3
Query: 375 VQHQTDDPSTSSSLHSLGLPRTP 307
V HQ P TS+S+ S GL +TP
Sbjct: 413 VYHQVFYPPTSTSVSSYGLGKTP 435
>SPBC20F10.06 |mad2||spindle checkpoint protein
Mad2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 203
Score = 25.8 bits (54), Expect = 3.7
Identities = 10/22 (45%), Positives = 14/22 (63%)
Frame = +1
Query: 238 VQRMFLIIRPKC*GLSLCYWQF 303
+Q++ L+I KC G L WQF
Sbjct: 80 IQKLILVITSKCSGEDLERWQF 101
>SPAC26A3.10 |||Arf GAP protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 923
Score = 25.4 bits (53), Expect = 4.9
Identities = 10/37 (27%), Positives = 21/37 (56%)
Frame = -1
Query: 122 FFYKTAYYLETATSTEPRKLPESQRLKIKLERKHWNT 12
+F++ ++ ++ LP Q+L +KLE+ W+T
Sbjct: 408 YFHRQYDHIALFSNLMNSVLPNLQQLNLKLEKTKWST 444
>SPAC144.15c |cog1||Golgi transport complex subunit Cog1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 701
Score = 25.4 bits (53), Expect = 4.9
Identities = 13/61 (21%), Positives = 29/61 (47%)
Frame = +3
Query: 204 FTKIFFAAGIFCSTHVFNN*AKMLRSFFVLLAISMVFAGVPTNEETKRLMDHLSDAEHYR 383
F + F+A I +FN + S ++ + ++ A +P + + L++ L ++Y
Sbjct: 111 FLQRFYAHAILFVMELFNKEQYLQSSKLLIFCLRILPADLPNDHQCHILVNRLESCKNYL 170
Query: 384 N 386
N
Sbjct: 171 N 171
>SPAC16C9.05 |||PHD finger containing protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 404
Score = 25.0 bits (52), Expect = 6.5
Identities = 10/27 (37%), Positives = 16/27 (59%)
Frame = -1
Query: 311 HHRNCQ*HKERPQHFGLIIKNMR*TKN 231
+H+NC+ H ++ H + K MR KN
Sbjct: 264 YHKNCKEHAKKCSHDSIGKKGMRVPKN 290
>SPCC594.02c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 489
Score = 25.0 bits (52), Expect = 6.5
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = -3
Query: 375 VQHQTDDPSTSSSLHSLGLPRTP 307
V H TD PS S+ S+ PR P
Sbjct: 411 VHHDTDAPSLSNVRKSVDSPRVP 433
>SPCC736.03c |||phenylalanyl-tRNA synthetase|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 429
Score = 25.0 bits (52), Expect = 6.5
Identities = 19/67 (28%), Positives = 32/67 (47%)
Frame = -3
Query: 381 DNVQHQTDDPSTSSSLHSLGLPRTPSKLPIAQRKTSTFWPNY*KHALNKKYRRQKISS*S 202
+NVQ ++ S ++ SLG P+T +++ K+ T++ N K L + S
Sbjct: 69 NNVQKESPIVSVETNFDSLGFPKT----HVSRSKSDTYYMNN-KTCLRTHTSAHQPEEFS 123
Query: 201 RLNKSKF 181
RL K F
Sbjct: 124 RLAKEGF 130
>SPCC1494.04c |tyr1||prephenate dehydrogenase [NADP+]
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 431
Score = 24.6 bits (51), Expect = 8.5
Identities = 13/34 (38%), Positives = 19/34 (55%), Gaps = 3/34 (8%)
Frame = +2
Query: 62 EVYVALLTW-RFPSSKQF--YKKKLIELPSYFNP 154
E VA+ +W ++K F YKK+ +E YF P
Sbjct: 375 EFVVAVRSWSECVAAKDFTTYKKRFLETQEYFRP 408
>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 476
Score = 24.6 bits (51), Expect = 8.5
Identities = 15/54 (27%), Positives = 25/54 (46%)
Frame = +3
Query: 267 KMLRSFFVLLAISMVFAGVPTNEETKRLMDHLSDAEHYRNEHHNKQFDHDAFLG 428
KMLR+F + G+ K L++ L+D+E R E + + F+G
Sbjct: 118 KMLRNFHYI-DHRQKDQGLNVRTRAKELVELLNDSERIRKERKRARQNRGKFIG 170
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,080,962
Number of Sequences: 5004
Number of extensions: 40850
Number of successful extensions: 150
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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