Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28o16
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0811 + 11437654-11438958 29 2.8
03_02_0809 + 11419318-11420493 29 2.8
08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811 28 3.7
03_06_0454 + 34044351-34044499,34045495-34045510,34045640-340458... 28 3.7
07_03_0539 - 19237573-19239169,19239258-19239410,19239505-192395... 28 4.9
05_04_0401 - 20982923-20983106,20983129-20983186,20983322-209835... 28 4.9
08_02_0444 - 17209447-17209491,17210559-17210849,17211655-172116... 27 6.5
07_03_0917 - 22574472-22574558,22574756-22574821,22574848-225748... 27 6.5
06_03_1119 + 27760412-27760527,27760851-27761010,27761283-277614... 27 6.5
05_04_0400 + 20977173-20977481,20978258-20978577,20978724-209788... 27 6.5
04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355 27 6.5
04_03_0489 + 16503325-16503747,16503916-16503978 27 8.6
02_03_0113 - 15381289-15381556,15381633-15381985,15382184-153822... 27 8.6
>03_02_0811 + 11437654-11438958
Length = 434
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 357 DPSTSSSLHSLGLPRTPSK-LPIAQRKTSTFWPN 259
DPSTSS+L T + LP+A + FWPN
Sbjct: 125 DPSTSSTLSLTSCDSTLCQGLPVASCGSPKFWPN 158
>03_02_0809 + 11419318-11420493
Length = 391
Score = 28.7 bits (61), Expect = 2.8
Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
Frame = -3
Query: 357 DPSTSSSLHSLGLPRTPSK-LPIAQRKTSTFWPN 259
DPSTSS+L T + LP+A + FWPN
Sbjct: 78 DPSTSSTLSLTSCDSTLCQGLPVASCGSPKFWPN 111
>08_01_0327 - 2942640-2943456,2944386-2944515,2944679-2944811
Length = 359
Score = 28.3 bits (60), Expect = 3.7
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = +3
Query: 321 VPTNEETKRLMDHLSDAEHYRNEHHNKQFDHD 416
+ EE +R + H H+ +EH N Q+D +
Sbjct: 291 IELEEEEQRQLGHHHHQHHHEHEHENHQWDEE 322
>03_06_0454 + 34044351-34044499,34045495-34045510,34045640-34045862,
34045969-34046092,34046168-34046294,34046821-34046882,
34046972-34048023,34048167-34048556,34048667-34052628,
34052710-34052796,34052885-34053004,34053096-34053152
Length = 2122
Score = 28.3 bits (60), Expect = 3.7
Identities = 11/36 (30%), Positives = 18/36 (50%)
Frame = -3
Query: 393 DAHCDNVQHQTDDPSTSSSLHSLGLPRTPSKLPIAQ 286
D N ++D+P +H LG+P P +L + Q
Sbjct: 1232 DDKAANSDLKSDEPFIDEKIHELGVPSVPMELEVEQ 1267
>07_03_0539 -
19237573-19239169,19239258-19239410,19239505-19239566,
19239855-19240103,19240248-19240337,19240453-19240632,
19240713-19240942,19241558-19241735,19242327-19242432,
19242786-19242883,19243683-19243813,19243908-19244087,
19244179-19244443,19244557-19244627,19244707-19244922,
19245147-19245294
Length = 1317
Score = 27.9 bits (59), Expect = 4.9
Identities = 14/50 (28%), Positives = 24/50 (48%)
Frame = +3
Query: 330 NEETKRLMDHLSDAEHYRNEHHNKQFDHDAFLGXDQAKTFDQLSPEESKR 479
+EE + MD+ +D Y E HN FD D + + ++ + + KR
Sbjct: 355 SEEMMQEMDYNADRAWYDCEEHNTMFDGDNSMYLEDDSSYKKREAQLPKR 404
>05_04_0401 -
20982923-20983106,20983129-20983186,20983322-20983503,
20983637-20983752,20984148-20984234,20984334-20984477,
20984556-20984672,20984790-20984936,20985717-20985938,
20986919-20987072,20987583-20987632,20987870-20987921,
20987985-20988211
Length = 579
Score = 27.9 bits (59), Expect = 4.9
Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 1/54 (1%)
Frame = -3
Query: 438 PGXLPKRRHDQTACYD-AHCDNVQHQTDDPSTSSSLHSLGLPRTPSKLPIAQRK 280
PG LP R DQTA A CD++ ++ D + +++ L R P+ P A R+
Sbjct: 453 PGILPMRISDQTAAIKLAICDDIGERSYDFADVAAILVQLLVRHPAVGPEAFRR 506
>08_02_0444 -
17209447-17209491,17210559-17210849,17211655-17211672,
17211798-17211969,17212523-17212630,17212940-17213382
Length = 358
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/33 (42%), Positives = 22/33 (66%), Gaps = 3/33 (9%)
Frame = -3
Query: 351 STSSSLHSLGLPRTPS--KLPIAQRKTS-TFWP 262
+ ++ LH+LG PRTP +LP+A+ +S WP
Sbjct: 30 TAAALLHALGPPRTPPCYQLPLAKVNSSLPLWP 62
>07_03_0917 -
22574472-22574558,22574756-22574821,22574848-22574886,
22574978-22575026,22575492-22575559,22575650-22575695,
22575773-22575866,22575956-22576018,22576436-22576558,
22577143-22577176,22577489-22577551,22577678-22577785,
22577914-22577976,22578322-22578378
Length = 319
Score = 27.5 bits (58), Expect = 6.5
Identities = 10/32 (31%), Positives = 17/32 (53%)
Frame = -3
Query: 462 VIVDRKFWPGXLPKRRHDQTACYDAHCDNVQH 367
++++ K WP LP HD T +H +Q+
Sbjct: 111 IVIEEKNWPPFLPLIHHDITNEIPSHLQRMQY 142
>06_03_1119 +
27760412-27760527,27760851-27761010,27761283-27761449,
27761525-27761629,27762097-27762864,27762942-27763131,
27763763-27763940,27764106-27764497
Length = 691
Score = 27.5 bits (58), Expect = 6.5
Identities = 13/30 (43%), Positives = 16/30 (53%)
Frame = +3
Query: 312 FAGVPTNEETKRLMDHLSDAEHYRNEHHNK 401
F GVP EE K MD +SD + HN+
Sbjct: 153 FMGVPEEEELKYTMDKISDNFSNYSAWHNR 182
>05_04_0400 +
20977173-20977481,20978258-20978577,20978724-20978850,
20979827-20979914,20980328-20980425,20980607-20980676,
20980787-20980887,20981207-20981323,20981417-20981493,
20981716-20982229
Length = 606
Score = 27.5 bits (58), Expect = 6.5
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = -3
Query: 498 PLFLQVSSYFLRVIVDRKFWPGXLPKRRHDQTACYDAHCDNVQHQTDDPSTSSSLHSLGL 319
P+ Q L+ + RKF PG + D + + ++ + P++ S L L
Sbjct: 516 PILTQEDKDMLKNVKFRKFVPGISKSQEFDTKSRHSKQIRLIKSNSQSPTSGSRKDMLSL 575
Query: 318 PRTPSKLPI 292
R+ S LP+
Sbjct: 576 RRS-SMLPV 583
>04_04_1150 + 31278367-31278885,31280065-31281278,31281759-31283355
Length = 1109
Score = 27.5 bits (58), Expect = 6.5
Identities = 9/20 (45%), Positives = 12/20 (60%)
Frame = +3
Query: 354 DHLSDAEHYRNEHHNKQFDH 413
DH S H+R+ HH +Q H
Sbjct: 131 DHQSQRHHHRHHHHQRQRHH 150
>04_03_0489 + 16503325-16503747,16503916-16503978
Length = 161
Score = 27.1 bits (57), Expect = 8.6
Identities = 13/44 (29%), Positives = 20/44 (45%)
Frame = -3
Query: 426 PKRRHDQTACYDAHCDNVQHQTDDPSTSSSLHSLGLPRTPSKLP 295
P+RRH + C + + P+T++ L G PR P P
Sbjct: 37 PRRRHLTSPCQNPAAAACLRRLRTPATAACLRRAGNPRPPPVSP 80
>02_03_0113 -
15381289-15381556,15381633-15381985,15382184-15382231,
15382260-15382439,15382835-15382954
Length = 322
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/35 (31%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
Frame = -1
Query: 425 QKGVMIKLLVMMLIAIMFSIRQMIH-QPLRLFIRW 324
+KG + ++M L + ++I Q+ H Q L++ RW
Sbjct: 201 EKGASVNEMIMELAKLSYNIMQIHHQQELKIITRW 235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,675,527
Number of Sequences: 37544
Number of extensions: 235281
Number of successful extensions: 600
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 585
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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