Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28o14
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit S...    26   2.6  
SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|...    25   6.1  
SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr 1|||Ma...    25   6.1  
SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription fact...    25   6.1  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    25   8.0  

>SPBC1778.04 |spo6||Spo4-Spo6 kinase complex regulatory subunit
           Spo6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/59 (27%), Positives = 30/59 (50%)
 Frame = -1

Query: 286 DLDVTLVILSRFRYYKTRIIAANSNVISYFDFHHFERSIKTNKLKPISSSTGWLGSMFT 110
           D+  T + +S+ RY++     A  N I YFD  + +  IK    + I++    + ++FT
Sbjct: 106 DIPRTSIRVSKLRYWQRDYRLAFPNFIFYFD--NVDEEIKRRVTQKINNLGAKVATLFT 162


>SPBC800.14c |||DUF1772 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 160

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 15/39 (38%), Positives = 22/39 (56%)
 Frame = -1

Query: 223 ANSNVISYFDFHHFERSIKTNKLKPISSSTGWLGSMFTL 107
           AN+ V  Y  +   +RSI ++KL  IS+ +G     FTL
Sbjct: 62  ANALVQGYLSYSERKRSIFSSKLYAISALSGLCIIPFTL 100


>SPAC25B8.13c |isp7||2-OG-Fe|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 397

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/23 (39%), Positives = 12/23 (52%)
 Frame = +2

Query: 359 EKFTKKYLERPYDNPNSWGKTYG 427
           +  +K  L RP+  PN W  T G
Sbjct: 190 DNLSKDRLLRPFQGPNKWPSTAG 212


>SPBPB8B6.04c |grt1|SPAPB8B6.04c, SPAPB8B6.04c|transcription factor
           Grt1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 648

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = +2

Query: 329 CVKFQKTCLGEKFTKKYLERPYDNPNS 409
           C K+ + C+  +F +K     Y+N NS
Sbjct: 33  CQKYNENCVYRQFYRKIKRLKYNNDNS 59


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 24.6 bits (51), Expect = 8.0
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +2

Query: 356 GEKFTKKYLERPYDNPNSWGKTYGEHKSHLEFSDT 460
           G++   +  E PY+ P  W K + +   + +F+ T
Sbjct: 586 GQELAMRGEEVPYNRPAIWEKGFPKRNPYYKFTST 620


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,026,579
Number of Sequences: 5004
Number of extensions: 39369
Number of successful extensions: 111
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 110
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 111
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)