Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28o09
         (547 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   1.4  
SPCC1682.03c |mug174||meiotically upregulated gene Mug174|Schizo...    27   1.4  
SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|...    27   1.8  
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    27   2.4  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    26   3.2  
SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces pombe...    25   5.5  
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    25   7.3  

>SPCC1494.07 |||conserved eukaryotic protein|Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 1502

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 8/23 (34%), Positives = 13/23 (56%)
 Frame = +3

Query: 372  CSAGRVCEINEHGDAMCNCIKDC 440
            C+A R+C++ E       C+ DC
Sbjct: 974  CTASRICKVREIASLSLTCLLDC 996


>SPCC1682.03c |mug174||meiotically upregulated gene
           Mug174|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 626

 Score = 27.5 bits (58), Expect = 1.4
 Identities = 19/74 (25%), Positives = 29/74 (39%), Gaps = 1/74 (1%)
 Frame = +1

Query: 325 MKTKKSTWKTLA*KSTAAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRI 504
           +K     W +    S A+Q     S  T      A R  P  Q  D+W ++    P + I
Sbjct: 124 LKENIREWSSKFMNSKASQKQQMLSPETMQKVDLAGRASPRYQANDSWISKKRNAPLSSI 183

Query: 505 AKY-TASDAYASTT 543
           ++Y    + YA  T
Sbjct: 184 SQYANMPENYALNT 197


>SPAC13G6.10c |||O-glucosyl hydrolase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 530

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +1

Query: 373 AAQDVSAKSTNTETPCVTASRTVPTRQTPDAWCAQTSTKPGNRIAKYTASDAYASTT 543
           A+  VSA +    TP V+++    +        + TS    + I+  T+S A AS T
Sbjct: 233 ASASVSAANKGVSTPAVSSAAASSSAVVSSVVSSATSVAASSTISSATSSSASASPT 289


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 2.4
 Identities = 19/80 (23%), Positives = 39/80 (48%)
 Frame = -3

Query: 404 FVDFADTSCAAVDFQARVFHVDFFVFILFIRDLVEKVVNSGYFCLMVSLLVQALRHSVLD 225
           ++ F +   + V+   RV+ VD    +  +    +  + +  + L +SLL+ A   + + 
Sbjct: 354 WISFDEFVTSDVEGSLRVYKVDGKAPVSTVSHAHDNSIVALRYNLRISLLLTASSDTTVK 413

Query: 224 VFSLRDVPAAELLRRWTFSS 165
           ++S  D  A E L  ++FSS
Sbjct: 414 LWSRGDAGAFECLHVFSFSS 433


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = -3

Query: 278 FCLMVSLLVQALRHSVLDVFSLRD 207
           FCL ++ ++  LR+SV  V +LRD
Sbjct: 449 FCLRINPMLDGLRNSVATVDALRD 472


>SPAC3A11.08 |pcu4|cul4, Cul-4|cullin 4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 734

 Score = 25.4 bits (53), Expect = 5.5
 Identities = 11/26 (42%), Positives = 17/26 (65%), Gaps = 1/26 (3%)
 Frame = -3

Query: 452 CLVGTVLDAVTHGVSVFVDFADT-SC 378
           CL+ + LD +T G+S F++  D  SC
Sbjct: 265 CLITSHLDTLTKGISQFIEKRDAHSC 290


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 25.0 bits (52), Expect = 7.3
 Identities = 14/44 (31%), Positives = 23/44 (52%)
 Frame = +1

Query: 283 PELTTFSTRSLMKRMKTKKSTWKTLA*KSTAAQDVSAKSTNTET 414
           P+ +TF+  +L  R+  K  +W  L   S+ +  V  K+T  ET
Sbjct: 295 PQFSTFNDNALRLRIYYKPKSW--LPKNSSCSLSVDVKATLLET 336


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,016,002
Number of Sequences: 5004
Number of extensions: 33978
Number of successful extensions: 107
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 107
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 225926624
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)