Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28o08
(634 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces ... 164 1e-41
SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual 32 0.060
SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr 2|... 29 0.74
SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchang... 28 0.97
SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc... 28 0.97
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom... 28 1.3
SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces... 26 3.9
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi... 26 3.9
SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|... 25 6.9
>SPAC144.12 |||ribose 5-phosphate isomerase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 274
Score = 164 bits (398), Expect = 1e-41
Identities = 80/156 (51%), Positives = 112/156 (71%), Gaps = 1/156 (0%)
Frame = +1
Query: 163 LEQAKQVAAYQAVDQ-FVTNNCIFGVGSGSTVVYAVQRLAERVESEKLKVTCIPTSFQAK 339
+E AK++A + AVD+ + N + G+GSGSTVVY V+RL + + V IPT FQ+K
Sbjct: 13 IELAKRLACHMAVDENYPENPKVIGIGSGSTVVYVVERLLTKPGVDS--VVFIPTGFQSK 70
Query: 340 QLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIA 519
QLI+ +GL LG+ + PN+DV+ DGADEVD N+ IKGGG CL QEK+IA +K+L+++A
Sbjct: 71 QLIVNNGLRLGDPDCYPNVDVSFDGADEVDDNLQCIKGGGACLFQEKLIAFLAKRLVIVA 130
Query: 520 DYTKDSVKLGDRYKKGVPIEVIPMAYVPIKNKIISL 627
D K+S LG+ +KKGVPIEV+PMAY I +++ L
Sbjct: 131 DSRKNSHVLGEYWKKGVPIEVMPMAYASILPQLVEL 166
>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1202
Score = 32.3 bits (70), Expect = 0.060
Identities = 14/40 (35%), Positives = 20/40 (50%)
Frame = +3
Query: 429 FKHDTYQRRGRVSVTRKNYCILFKEAYCYCGLYKRFCKTW 548
F DT RG + RKN +L + +CY GL ++ W
Sbjct: 1088 FNRDTECYRGSMQKGRKNIALLLRGFFCYYGLTTQYSFDW 1127
>SPBC16C6.03c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 158
Score = 28.7 bits (61), Expect = 0.74
Identities = 11/25 (44%), Positives = 18/25 (72%)
Frame = -3
Query: 479 FSCNRHPPPPLISVMFESTSSAPSI 405
F ++ PPPP+I+ FE T+S+ S+
Sbjct: 6 FIYDKPPPPPIINKPFEQTNSSASL 30
>SPAC19A8.01c |sec73|sec7c, SPAC23H3.01|guanyl-nucleotide exchange
factor Sec73 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 28.3 bits (60), Expect = 0.97
Identities = 25/82 (30%), Positives = 38/82 (46%)
Frame = +1
Query: 385 NPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKK 564
NP+++ T EV S L K GG Q + +++ S I+ K SVK+ D K+
Sbjct: 170 NPDVNSTTSSPSEVGS---LDKAGGPLNQQNENLSAESDNTILQNGTRKSSVKMSDLGKR 226
Query: 565 GVPIEVIPMAYVPIKNKIISLY 630
+ V+ PI+ I S Y
Sbjct: 227 IASLPVVKRP--PIQFSISSDY 246
>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 997
Score = 28.3 bits (60), Expect = 0.97
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 259 KQQWIRYRHQKCNYS*QID 203
K++W R+R + CNYS ++D
Sbjct: 9 KRRWNRFRREMCNYSKRLD 27
>SPAC1486.09 |||ribosome biogenesis protein Nob1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 388
Score = 27.9 bits (59), Expect = 1.3
Identities = 11/28 (39%), Positives = 18/28 (64%)
Frame = +1
Query: 286 VESEKLKVTCIPTSFQAKQLIIKHGLNL 369
V+ + LKV C T F + ++++ GLNL
Sbjct: 211 VQPKHLKVACATTDFSMQNVLLQIGLNL 238
>SPCC622.10c |||exocyst complex subunit Sec5 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 815
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/28 (39%), Positives = 17/28 (60%)
Frame = +1
Query: 391 NIDVTIDGADEVDSNMTLIKGGGGCLLQ 474
N+D T+ G EV + M LI+ C+L+
Sbjct: 377 NLDYTLRGRPEVFAGMQLIEWANACVLK 404
>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
spliced|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/19 (52%), Positives = 12/19 (63%)
Frame = +3
Query: 492 LFKEAYCYCGLYKRFCKTW 548
LF ++ Y GL RFCK W
Sbjct: 291 LFLKSIHYIGLCSRFCKQW 309
>SPCC1183.10 |wtf10||wtf element Wtf10|Schizosaccharomyces pombe|chr
3|||Manual
Length = 258
Score = 25.4 bits (53), Expect = 6.9
Identities = 20/72 (27%), Positives = 34/72 (47%)
Frame = +1
Query: 106 ASKLISRHFFIQSTTLKMSLEQAKQVAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAER 285
A ++ISRHFF + LK SL + A ++ F+ V GS V ++++
Sbjct: 182 ALRIISRHFFGKRWGLKCSLAD-HIIFAILSILVFIAET----VKPGSIRVNLIRKMGHE 236
Query: 286 VESEKLKVTCIP 321
+ + + T IP
Sbjct: 237 AKQQVNEYTAIP 248
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,363,851
Number of Sequences: 5004
Number of extensions: 47254
Number of successful extensions: 135
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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