Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28o08
(634 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_0550 - 4099485-4099659,4100295-4100728,4101783-4102187 101 6e-22
04_03_0280 + 13854758-13855585 94 7e-20
03_06_0182 - 32182202-32182272,32182351-32182468,32182734-321828... 45 6e-05
04_04_1273 - 32307273-32307569,32307659-32307791,32307874-323081... 31 1.0
10_07_0080 - 12704866-12705224,12705389-12705512,12705905-127060... 29 2.3
06_02_0208 - 13026296-13026654,13027394-13027497,13028109-130282... 28 5.4
08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754 28 7.1
10_08_0789 + 20569738-20570207,20573425-20573464,20573484-205735... 27 9.4
09_06_0034 + 20370672-20371109,20371120-20371515 27 9.4
>07_01_0550 - 4099485-4099659,4100295-4100728,4101783-4102187
Length = 337
Score = 101 bits (241), Expect = 6e-22
Identities = 55/148 (37%), Positives = 89/148 (60%), Gaps = 1/148 (0%)
Frame = +1
Query: 157 MSLEQAKQVAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQ 333
++ + K++AA +AV+Q V + + G+G+GST +AV + + S KL + +PTS +
Sbjct: 47 LTQDDLKRLAAVRAVEQ-VESGMVLGLGTGSTAAFAVAEIGALLASGKLSGIVGVPTSKR 105
Query: 334 AKQLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIV 513
+ G+ L L+ +P ID+ IDGADEVD ++ L+KG GG LL+EK++ + S K IV
Sbjct: 106 TFEQAQSLGIPLSTLDDHPRIDLAIDGADEVDPDLNLVKGRGGALLREKMVEAASDKFIV 165
Query: 514 IADYTKDSVKLGDRYKKGVPIEVIPMAY 597
+ D TK LG +P+EV+ +
Sbjct: 166 VVDETKLVTGLGGS-GLAMPVEVVQFCW 192
>04_03_0280 + 13854758-13855585
Length = 275
Score = 94.3 bits (224), Expect = 7e-20
Identities = 55/142 (38%), Positives = 85/142 (59%), Gaps = 1/142 (0%)
Frame = +1
Query: 166 EQAKQVAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAKQ 342
E+ K+VAA++AV+ V G+G+GST +A+ RL + + S +L V +PTS + +
Sbjct: 35 EELKRVAAHRAVEM-VEPGMTLGLGTGSTAAHALDRLGDLLRSGELAAVAGVPTSLKTEA 93
Query: 343 LIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGGGCLLQEKIIASCSKKLIVIAD 522
+ G+ + L ID++IDGADEVD + L+KG GG LL+EK+I + +VI D
Sbjct: 94 HAARVGIPMLPLGEAGGIDLSIDGADEVDPELNLVKGRGGSLLREKMIEGSGGRFVVIVD 153
Query: 523 YTKDSVKLGDRYKKGVPIEVIP 588
+K +LG VP+EV+P
Sbjct: 154 ESKLVPRLG--CTGAVPVEVVP 173
>03_06_0182 -
32182202-32182272,32182351-32182468,32182734-32182829,
32182940-32183047,32183135-32183204,32183346-32183473,
32183570-32183755
Length = 258
Score = 44.8 bits (101), Expect = 6e-05
Identities = 36/124 (29%), Positives = 55/124 (44%), Gaps = 8/124 (6%)
Frame = +1
Query: 184 AAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLK-VTCIPTSFQAKQLIIKHG 360
AA VD+FV + + G+GSG A+Q L R+ L + IP+S + +K G
Sbjct: 58 AAKLTVDRFVESGMVVGLGSGPASGLAIQYLGTRLRRGSLTGILGIPSSTISASEAVKAG 117
Query: 361 LNLGELETNPNIDVTIDGADEVDSN-MTLIKG------GGGCLLQEKIIASCSKKLIVIA 519
+ + E ID AD ++ + MT + G G + EK I + KL I
Sbjct: 118 IQVSSYEEGTQIDFAFTDADIIEEDTMTAVIGRRKTESGEPSFMVEKGIVKSADKLAFII 177
Query: 520 DYTK 531
+ K
Sbjct: 178 GHEK 181
>04_04_1273 -
32307273-32307569,32307659-32307791,32307874-32308105,
32308220-32308436,32308594-32308718,32309416-32310757
Length = 781
Score = 30.7 bits (66), Expect = 1.0
Identities = 18/69 (26%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Frame = +1
Query: 181 VAAYQAVDQFVTNNCIFGVGSGSTVVYAVQRLAERVESEKLKVTCIPTSFQ---AKQLII 351
+A +++ + + NC+ G G STV VQ V ++LK + + + A+++ +
Sbjct: 463 LATIKSITENFSENCLIGEGGFSTVYKGVQSDGRMVAVKRLKQSALTNKGKKDFAREVAV 522
Query: 352 KHGLNLGEL 378
GL+ G L
Sbjct: 523 MAGLHHGSL 531
>10_07_0080 -
12704866-12705224,12705389-12705512,12705905-12706041,
12707971-12708106,12710346-12710759
Length = 389
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/37 (37%), Positives = 22/37 (59%)
Frame = +2
Query: 182 SRRIKLSINLLRIIAFLVSVADPLLFMQYKDSLNALN 292
S R+K++I R +AFL A P+++ +K S LN
Sbjct: 192 STRLKIAIGAARGLAFLHEAAKPVIYRDFKTSNILLN 228
>06_02_0208 -
13026296-13026654,13027394-13027497,13028109-13028200,
13028418-13028774,13029932-13030109,13030454-13030507,
13030701-13030784,13031521-13031714
Length = 473
Score = 28.3 bits (60), Expect = 5.4
Identities = 21/99 (21%), Positives = 37/99 (37%), Gaps = 2/99 (2%)
Frame = +1
Query: 139 QSTTLKMSLEQAKQVAAYQAVDQFVTNNCIFGVGSGSTVVY--AVQRLAERVESEKLKVT 312
+ +T++ ++A V + + C S S VVY A+ ++ L
Sbjct: 279 EGSTMQTQFQEANHVDSSEITSSTGLEGCYSNYQSRSNVVYRSALANTISPTDATGLAKH 338
Query: 313 CIPTSFQAKQLIIKHGLNLGELETNPNIDVTIDGADEVD 429
+ +A + N GE+E I DGA +D
Sbjct: 339 LVIVCRKAADAFLTTAENKGEMEVEREIHTDSDGATNMD 377
>08_01_0570 - 5073138-5073410,5075386-5075530,5075561-5075754
Length = 203
Score = 27.9 bits (59), Expect = 7.1
Identities = 15/43 (34%), Positives = 21/43 (48%)
Frame = -3
Query: 467 RHPPPPLISVMFESTSSAPSIVTSIFGFVSSSPRLSPCLIISC 339
R PPPP S + + S + G S +PRLS L ++C
Sbjct: 22 RPPPPPSKSPSYINPSVPDIFIELCIGRRSPAPRLSTTLPLAC 64
>10_08_0789 + 20569738-20570207,20573425-20573464,20573484-20573536,
20573633-20574212,20574323-20575384,20575631-20575813,
20576112-20576199,20576285-20576532,20576712-20577053,
20579026-20579163,20579521-20579547
Length = 1076
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/57 (26%), Positives = 28/57 (49%), Gaps = 2/57 (3%)
Frame = +1
Query: 385 NPNIDVTIDGADEVDSNMTLIKGGGGCLLQE--KIIASCSKKLIVIADYTKDSVKLG 549
NP V A++ ++ L+ GGGGC + + +C+ + ++ Y K +LG
Sbjct: 963 NPEKPVLTPTANQPSAHCVLVIGGGGCPSDSTAEPVLACNMQFMIQNSYGKGFGELG 1019
>09_06_0034 + 20370672-20371109,20371120-20371515
Length = 277
Score = 27.5 bits (58), Expect = 9.4
Identities = 16/36 (44%), Positives = 17/36 (47%)
Frame = -3
Query: 476 SCNRHPPPPLISVMFESTSSAPSIVTSIFGFVSSSP 369
S HPPPP F TSS P+ F F SS P
Sbjct: 226 SSQHHPPPPHAGAGF--TSSEPAADHQSFNFHSSWP 259
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,319,081
Number of Sequences: 37544
Number of extensions: 277572
Number of successful extensions: 881
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 860
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 878
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -