Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28o08
         (634 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5422| Best HMM Match : No HMM Matches (HMM E-Value=.)               64   1e-10
SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)              31   0.59 
SB_46401| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)                      29   4.1  
SB_14232| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)                    27   9.6  
SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)                   27   9.6  

>SB_5422| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 248

 Score = 63.7 bits (148), Expect = 1e-10
 Identities = 29/43 (67%), Positives = 36/43 (83%)
 Frame = +1

Query: 331 QAKQLIIKHGLNLGELETNPNIDVTIDGADEVDSNMTLIKGGG 459
           QA+QLI ++ L L +LE NP +DV IDGADEVD+N+TLIKGGG
Sbjct: 37  QAQQLITENKLVLSDLERNPELDVAIDGADEVDANLTLIKGGG 79


>SB_15350| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1126

 Score = 31.5 bits (68), Expect = 0.59
 Identities = 27/107 (25%), Positives = 51/107 (47%), Gaps = 4/107 (3%)
 Frame = +1

Query: 280 ERVESEKLKVTCIPTSFQAKQLIIKHGLN-LGELETNPNIDVTIDGADEVDSNMTLIKGG 456
           E+VES     T + T+ + ++   K  ++   + E +P ++V I    EV S++   +  
Sbjct: 242 EKVESSTDFETHVSTTPENQESAKKLKMSDTPQKEISPKVEVIIPETPEVHSSLNANQNT 301

Query: 457 GG---CLLQEKIIASCSKKLIVIADYTKDSVKLGDRYKKGVPIEVIP 588
                C     I+ S  K L VI + T+ S+K+ +  +    +EV+P
Sbjct: 302 PSPRRCKTSMSIVISPVKPLSVIQETTESSIKVDEHSQVVEVVEVLP 348


>SB_46401| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 484

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 25/99 (25%), Positives = 44/99 (44%), Gaps = 6/99 (6%)
 Frame = +1

Query: 250 TVVYAVQRLAE--RVESEKLKVTCIPTSFQAKQLIIKHGLNLGELETNPNIDVTIDGADE 423
           T+  AV+   E  R+E     VT   T  Q ++L   +GL     E    +DV+      
Sbjct: 225 TLSIAVKVFCEKLRIEKNSFLVTKQNTKQQRRRLHRHYGLKTRPRENQDGLDVSEQELKR 284

Query: 424 VDSNMTLIKGGGGCLLQEKI----IASCSKKLIVIADYT 528
             S + L+  GG    +E+I    +  C+++L  + ++T
Sbjct: 285 SSSEVVLLGAGGFFWSKERITDEDLVKCTERLHEVDEHT 323


>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
          Length = 451

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 195 SCRSICYE*LHFWCR*RIHCCLC 263
           SCR +CY     +C  R+ CC C
Sbjct: 131 SCRVVCYSCRVVFCSCRVACCSC 153



 Score = 28.7 bits (61), Expect = 4.1
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 195 SCRSICYE*LHFWCR*RIHCCLC 263
           SCR +CY     +C  R+ CC C
Sbjct: 194 SCRVVCYSCRVVFCSCRVACCSC 216


>SB_14232| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 121

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 14/30 (46%), Positives = 17/30 (56%)
 Frame = -3

Query: 479 FSCNRHPPPPLISVMFESTSSAPSIVTSIF 390
           FS   HPPPP +S   ES +   +IV S F
Sbjct: 57  FSDPPHPPPPPVSAPGESPTPVRAIVLSRF 86


>SB_32407| Best HMM Match : WSC (HMM E-Value=0.0008)
          Length = 832

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 1/45 (2%)
 Frame = +3

Query: 87  VIRENNSKQTNKSSFLHTKYDVEDVFRTSEASRGVSSCRSI-CYE 218
           VIR  NSKQ +K+S   T         +SEAS+   S + + C++
Sbjct: 652 VIRLGNSKQPHKASHSQTTAQTTQTSSSSEASQNSFSIQMVGCFK 696


>SB_10066| Best HMM Match : GPS (HMM E-Value=8.6e-07)
          Length = 1146

 Score = 27.5 bits (58), Expect = 9.6
 Identities = 16/51 (31%), Positives = 28/51 (54%)
 Frame = -3

Query: 182 TCFACSKDIFNVVLCMKK*RLISLLAIIFSYYLSSISVYNNILRLF*FTTQ 30
           +CF+CS  +++ VL +   R    L +     L + S+Y+ +L LF F+ Q
Sbjct: 711 SCFSCSGSLYSFVLLLF--RFSLQLRVTSDQVLCTGSLYSFVLLLFRFSLQ 759


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,065,797
Number of Sequences: 59808
Number of extensions: 334500
Number of successful extensions: 954
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 854
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 950
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)