Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28o07
         (646 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1683.12 |||nicotinic acid plasma membrane transporter |Schiz...    38   0.002
SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr...    36   0.007
SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomy...    30   0.25 
SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyce...    30   0.33 
SPAC11D3.18c |||nicotinic acid plasma membrane transporter |Schi...    29   0.76 
SPAC1039.04 |||nicotinic acid plasma membrane transporter |Schiz...    27   1.8  
SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyce...    27   3.1  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   4.0  
SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter |Schizosa...    26   4.0  
SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr...    26   4.0  
SPAC1002.16c |||nicotinic acid plasma membrane transporter |Schi...    26   4.0  
SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr 1||...    26   4.0  
SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   5.3  
SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomy...    25   7.1  
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo...    25   7.1  
SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|...    25   9.3  

>SPBC1683.12 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 482

 Score = 37.5 bits (83), Expect = 0.002
 Identities = 22/95 (23%), Positives = 44/95 (46%)
 Frame = +3

Query: 345 FFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCRLIQGM 524
           F+  Y T   P  ++ +KFG  + +S  +    +V+I + ++  +  W  L   RL+ G+
Sbjct: 88  FYATYITAETPSVLLVKKFGPHYYLSAMIIGWSLVTIFTCFVRHY--W-SLVLTRLLLGI 144

Query: 525 TQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQF 629
            +   +P +   +       E+G+   Y+Y  S F
Sbjct: 145 CEGGFFPCLSLYISMTYKREEQGKRLAYLYVCSCF 179


>SPCC417.10 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 508

 Score = 35.5 bits (78), Expect = 0.007
 Identities = 27/101 (26%), Positives = 47/101 (46%), Gaps = 1/101 (0%)
 Frame = +3

Query: 342 AFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCRLIQG 521
           AF++GY     P  ++ Q    +FP+S  L V  V+      +   + + G    R++ G
Sbjct: 108 AFYLGYLVFEFPASLLLQ----RFPLSKTLCVFLVIWGFLLCMTSVANYPGFIALRVLLG 163

Query: 522 MTQAALYPSMHTMLGKWAPLSERGRLSTYVYTG-SQFGTIL 641
           M ++A  P    +  +W   SE+ +L T V+   +  G IL
Sbjct: 164 MMESAASPGFILLTAQWYKRSEQ-QLRTSVWVAFNGLGQIL 203


>SPAC23D3.12 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 559

 Score = 30.3 bits (65), Expect = 0.25
 Identities = 27/101 (26%), Positives = 43/101 (42%), Gaps = 5/101 (4%)
 Frame = +3

Query: 351 VGYTTMMIPMGIIAQKFGGKF----PISVALFVNGVVSIISPWIPLFSG-WMGLATCRLI 515
           +G     I  G +   FG KF     + V +    +V  +   IP   G  M +   R +
Sbjct: 99  IGNVFGQILFGFMGDFFGRKFVYGKEMIVVIIATVLVIALPKSIPTPLGKMMWIFAWRWL 158

Query: 516 QGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQFGTI 638
            G+     YP   T+  + + LS RG L + V++   FGT+
Sbjct: 159 LGLGIGGDYPMSATITSERSLLSRRGTLLSIVFSFQGFGTL 199


>SPAC1B3.16c |vht1||vitamin H transporter Vth1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 568

 Score = 29.9 bits (64), Expect = 0.33
 Identities = 20/104 (19%), Positives = 38/104 (36%), Gaps = 1/104 (0%)
 Frame = +3

Query: 336 LFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSG-WMGLATCRL 512
           L  F+VGY    +P  ++      +  +S      GVV      +    G        R 
Sbjct: 133 LALFYVGYIIFEVPSNLMMAFIEPRIWVSRIQLTIGVVGACHAVLGTKHGNAQSYVALRF 192

Query: 513 IQGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQFGTILI 644
             G+ ++ L+P +   + +W      G+   + YT +Q     +
Sbjct: 193 FLGVAESGLWPGLAYYMSRWYRGKHLGKRIGWYYTAAQIAAAAV 236


>SPAC11D3.18c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 498

 Score = 28.7 bits (61), Expect = 0.76
 Identities = 18/93 (19%), Positives = 43/93 (46%)
 Frame = +3

Query: 345 FFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCRLIQGM 524
           F+V Y  +  P  ++ ++      ++   F   +  + S ++   S + GL   RLI G+
Sbjct: 105 FYVLYILVETPSVVLVKRIKASRMLAFISFAWSMTVLFSGFM---SSYGGLIATRLILGL 161

Query: 525 TQAALYPSMHTMLGKWAPLSERGRLSTYVYTGS 623
            +  L+P+++  L       E+ +  +Y++  +
Sbjct: 162 LEGCLFPALNLYLTTHYTRKEQCQRLSYLFASA 194


>SPAC1039.04 |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 507

 Score = 27.5 bits (58), Expect = 1.8
 Identities = 22/108 (20%), Positives = 44/108 (40%), Gaps = 4/108 (3%)
 Frame = +3

Query: 330 MILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCR 509
           +++  F++ +     P   + ++FG    +   +   G +S+    +  F G M +   R
Sbjct: 100 IMISIFYIPFVLCAFPFSYLYKRFGAARILPFFMLSFGAMSLCQAAVKNFGGMMAV---R 156

Query: 510 LIQGMTQAALYPSMHTMLGKWAPLSERGRLSTYVY----TGSQFGTIL 641
              GM ++A+ P +   L  +   +E  R     Y      S FG +L
Sbjct: 157 WFLGMAESAVLPGVVYYLTTFYRRTELARRLAIFYAAANVSSAFGGLL 204


>SPCC2H8.02 |||inorganic phosphate transporter|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 20/101 (19%), Positives = 44/101 (43%), Gaps = 5/101 (4%)
 Frame = +3

Query: 351 VGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIP-----LFSGWMGLATCRLI 515
           +G     +  G +   FG KF     + V  + +I+   +P       +  M L   R++
Sbjct: 94  IGNIMGQLLFGFLGDFFGRKFVYGKEMMVVIIATILIICLPDRIPTPTAKMMWLFAFRVM 153

Query: 516 QGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQFGTI 638
            G+     YP   ++  + + ++ RG L  ++++   +GT+
Sbjct: 154 LGIGIGGDYPMSASITSEQSLINRRGALLAWIFSNQGWGTL 194


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/53 (24%), Positives = 23/53 (43%)
 Frame = +3

Query: 375  PMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCRLIQGMTQA 533
            P G++A +FG K  + +   V G+  +   W  + S       C+  +   QA
Sbjct: 1526 PFGLVAVEFGRKGTLGIGAKVGGLGQMPGWWYTIESNTTAHLLCQFEEACRQA 1578


>SPBC2G2.01c |liz1|SPBC4B4.13c|pantothenate transporter
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 514

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 20/81 (24%), Positives = 33/81 (40%)
 Frame = +3

Query: 345 FFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCRLIQGM 524
           F  GY    +P     Q+   +   SV   + G+++I S  +      M L   R    +
Sbjct: 76  FTCGYIIGQLPGSYALQRVPARLWFSVMNILWGLMTIFSFAVHSVRALMIL---RFFMAV 132

Query: 525 TQAALYPSMHTMLGKWAPLSE 587
            +A+ +   H +LG W   SE
Sbjct: 133 AEASTFAGTHYILGAWYKESE 153


>SPAC18G6.15 |mal3||EB1 family Mal3|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 308

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = -3

Query: 644 DQDCSELRSRVDISAQSSSFTQRCPFTQHCVHARIES 534
           D D + +     ++    S TQR P     VHAR++S
Sbjct: 261 DHDTNNVAEEAQMTDLKDSETQRVPSAPDFVHARLQS 297


>SPAC1002.16c |||nicotinic acid plasma membrane transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 499

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 16/74 (21%), Positives = 34/74 (45%)
 Frame = +3

Query: 330 MILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCR 509
           +I   F+V +    +P  ++ +K   K  ++  +    + +I + +   F G   L   R
Sbjct: 98  IIASVFYVTFILFEMPTTLLMKKVQPKRMLAFIVISYSLTTIFTGFCHNFGG---LLAAR 154

Query: 510 LIQGMTQAALYPSM 551
           L+ G  +A L+P +
Sbjct: 155 LVLGFCEAGLFPCL 168


>SPAC29B12.12 |||helper of TIM |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 113

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
 Frame = -2

Query: 132 VPKLECGGCQSLLVPEFLVMTLH--IC-HPLVPPCR 34
           +P + CG C++ L  E    T+H   C HP  P C+
Sbjct: 68  IPCVICGACKNSLTVEEYRSTVHCKYCNHPFNPKCK 103


>SPCC548.05c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 468

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 16/37 (43%), Positives = 18/37 (48%), Gaps = 7/37 (18%)
 Frame = -3

Query: 572 PFTQHCVHARIESCLCHPLNQS----TCGQ---THPS 483
           PFT HC H     CL + L +S    TC Q   T PS
Sbjct: 95  PFTTHCGHTYCYECLLNWLKESKSCPTCRQKLYTQPS 131


>SPBC1683.01 |||inorganic phosphate transporter |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 573

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 21/101 (20%), Positives = 41/101 (40%), Gaps = 5/101 (4%)
 Frame = +3

Query: 351 VGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPL-----FSGWMGLATCRLI 515
           +G     +  G +   FG KF     + +  + +I+   +P       S  M +   R +
Sbjct: 104 IGNIFGQLMFGFMGDFFGRKFVYGKEMIIVIIATILLIAMPKSIHSPLSKMMWVFCWRWL 163

Query: 516 QGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQFGTI 638
            G+     YP    +  + + L+ RG L + ++    FGT+
Sbjct: 164 LGVGIGGDYPMSAAITSERSKLNRRGTLISLIFAFQGFGTL 204


>SPCC1739.11c |cdc11||SIN component scaffold protein
            Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1045

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 10/18 (55%), Positives = 12/18 (66%)
 Frame = +1

Query: 46   YQRMTNMKGHHQKFRHQK 99
            YQ+  N KGHH+K   QK
Sbjct: 972  YQQSINQKGHHRKEDPQK 989


>SPCC31H12.06 |mug111||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 468

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 423 VALFVNGVVSIISPWIPLFSGWMG 494
           V  F + ++  ++PW  +F+ W+G
Sbjct: 75  VVPFYSTIIKKLTPWFTVFTTWVG 98


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,831,461
Number of Sequences: 5004
Number of extensions: 60592
Number of successful extensions: 154
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)