Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28o07
(646 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_06_0351 + 22466160-22466217,22466514-22467052,22467186-224672... 68 6e-12
01_01_1227 + 9912646-9913056,9913306-9913413,9913517-9913672,991... 67 1e-11
11_01_0557 + 4394754-4396040 64 7e-11
01_06_1363 - 36681605-36681789,36681875-36681908,36682017-366821... 64 1e-10
05_05_0059 + 22011168-22011662,22012668-22012894,22013029-220133... 56 2e-08
12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106 45 5e-05
09_06_0242 - 21806370-21806483,21806574-21806660,21806865-218069... 41 7e-04
08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624 31 0.78
03_02_0028 - 5118621-5119448 30 1.8
09_04_0713 - 19675437-19675551,19675872-19676017,19676226-196762... 29 2.4
09_02_0544 - 10435796-10435852,10435944-10436288,10436477-10436971 29 2.4
08_02_1602 - 28148255-28149413,28151927-28152087 29 3.2
04_04_1074 + 30628192-30628456,30628924-30629144 29 3.2
01_05_0657 + 24034198-24036306 29 3.2
12_01_0356 - 2707820-2708395,2708475-2708705,2709071-2709190,270... 28 7.3
10_08_0029 + 14270945-14271364,14271449-14272486 28 7.3
05_05_0156 + 22792783-22793410,22797153-22797227,22797644-227988... 28 7.3
08_02_1427 - 27020819-27020918,27021017-27021081,27021160-270212... 27 9.7
07_01_1019 + 8714171-8714190,8714239-8714371,8714781-8714945,871... 27 9.7
04_03_0720 - 19008890-19009204,19009324-19009593 27 9.7
03_05_0897 - 28605324-28605928,28606725-28606899 27 9.7
03_01_0530 + 3971990-3972331,3972415-3972489,3972608-3972661,397... 27 9.7
01_06_1753 - 39664219-39665445 27 9.7
01_06_1723 - 39443176-39443505,39443615-39443710,39443834-394439... 27 9.7
>09_06_0351 +
22466160-22466217,22466514-22467052,22467186-22467293,
22467391-22467546,22467916-22468131,22468639-22468776,
22468880-22468981,22469089-22469146,22469346-22469408,
22469543-22469640
Length = 511
Score = 68.1 bits (159), Expect = 6e-12
Identities = 37/129 (28%), Positives = 62/129 (48%)
Frame = +3
Query: 252 NTSCVTEEISAWSVYRTYNWNKSTQEMILFAFFVGYTTMMIPMGIIAQKFGGKFPISVAL 431
N V I+ + + W+ +T +I +FF GY I GI A +FGGK + +
Sbjct: 196 NMDRVNMSIAILPMSSEFGWSPATVGLIQSSFFWGYLLTQILGGIWADRFGGKVVLGFGV 255
Query: 432 FVNGVVSIISPWIPLFSGWMGLATCRLIQGMTQAALYPSMHTMLGKWAPLSERGRLSTYV 611
+ ++++P + G L R G+ + P+M+ +L KW P+SER R V
Sbjct: 256 VWWSIATVLTP-LAAKIGLPFLLVMRAFMGIGEGVAMPAMNNILSKWVPVSERSRSLALV 314
Query: 612 YTGSQFGTI 638
Y+G G++
Sbjct: 315 YSGMYLGSV 323
>01_01_1227 +
9912646-9913056,9913306-9913413,9913517-9913672,
9914110-9914325,9914436-9914645,9914722-9914859,
9915076-9915177,9915508-9915603
Length = 478
Score = 66.9 bits (156), Expect = 1e-11
Identities = 39/138 (28%), Positives = 61/138 (44%)
Frame = +3
Query: 225 LCSNVSTSENTSCVTEEISAWSVYRTYNWNKSTQEMILFAFFVGYTTMMIPMGIIAQKFG 404
LC + N V I+ + + WN T +I +FF GY I GI A G
Sbjct: 125 LCFSAFLLCNMDRVNMSIAILPMSAEFGWNPQTVGLIQSSFFWGYLLTQIAGGIWADTVG 184
Query: 405 GKFPISVALFVNGVVSIISPWIPLFSGWMGLATCRLIQGMTQAALYPSMHTMLGKWAPLS 584
GK + + + + ++P+ G L R G+ + P+M+ +L KW P+S
Sbjct: 185 GKTVLGFGVIWWSIATALTPFAAKL-GLPFLLVTRAFMGVGEGVAMPAMNNILSKWVPVS 243
Query: 585 ERGRLSTYVYTGSQFGTI 638
ER R VY+G G++
Sbjct: 244 ERSRSLALVYSGMYLGSV 261
>11_01_0557 + 4394754-4396040
Length = 428
Score = 64.5 bits (150), Expect = 7e-11
Identities = 37/115 (32%), Positives = 63/115 (54%), Gaps = 4/115 (3%)
Frame = +3
Query: 312 NKSTQEMILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWM 491
N++ + MIL F+ GY IP G AQ+ GG+ + ++ + + + P P + +
Sbjct: 41 NQANKGMILSMFYYGYVLSQIPGGWAAQRLGGRLVLLLSFVLWSSICAVVPLDP--NRVI 98
Query: 492 GLATCRLIQGMTQAALYPSMHTMLGKWAPLSERGR---LSTY-VYTGSQFGTILI 644
L RL+ G+ Q ++PS+HT+L +W P ER R L+T +Y G+ G +L+
Sbjct: 99 LLVLSRLLVGVAQGLIFPSIHTVLAQWVPPQERSRSVSLTTSGMYLGAACGMLLL 153
>01_06_1363 -
36681605-36681789,36681875-36681908,36682017-36682154,
36682578-36682724,36682821-36682865,36683043-36683331,
36683443-36683669,36684109-36684528
Length = 494
Score = 63.7 bits (148), Expect = 1e-10
Identities = 34/130 (26%), Positives = 60/130 (46%)
Frame = +3
Query: 252 NTSCVTEEISAWSVYRTYNWNKSTQEMILFAFFVGYTTMMIPMGIIAQKFGGKFPISVAL 431
N V ++ + + Y W S ++ +F GY I G + +GGK ++ +
Sbjct: 112 NADRVVMSVAIVPLSQAYGWTPSFAGVVQSSFLWGYLVSPIIGGALVDYYGGKRVMAYGV 171
Query: 432 FVNGVVSIISPWIPLFSGWMGLATCRLIQGMTQAALYPSMHTMLGKWAPLSERGRLSTYV 611
+ + + +SPW S W+ L+T R++ GM + PSM+ M+ +W P +ER
Sbjct: 172 ALWSLATFLSPWAAARSLWLFLST-RVLLGMAEGVALPSMNNMVLRWFPRTERSSAVGIA 230
Query: 612 YTGSQFGTIL 641
G Q G +
Sbjct: 231 MAGFQLGNTI 240
>05_05_0059 +
22011168-22011662,22012668-22012894,22013029-22013377,
22013464-22013508,22013589-22013735,22013851-22013988,
22014126-22014159,22014258-22014430
Length = 535
Score = 56.0 bits (129), Expect = 2e-08
Identities = 31/113 (27%), Positives = 53/113 (46%)
Frame = +3
Query: 303 YNWNKSTQEMILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFS 482
Y W+ S ++ +F GY + G +A ++GGK ++ A + + + ++PW S
Sbjct: 154 YGWSSSFLGIVQSSFLWGYVFSSMVGGALADRYGGKKVMAGAAALWSLATFLTPWAASQS 213
Query: 483 GWMGLATCRLIQGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQFGTIL 641
M LA R + G+ + +P+M T L KW P ER G G ++
Sbjct: 214 TIMLLA-IRALFGLAEGVAFPTMSTFLPKWFPTHERATAVGISMGGFHLGNVI 265
>12_01_0510 + 4042321-4042411,4044653-4044723,4044985-4046106
Length = 427
Score = 45.2 bits (102), Expect = 5e-05
Identities = 25/87 (28%), Positives = 44/87 (50%)
Frame = +3
Query: 372 IPMGIIAQKFGGKFPISVALFVNGVVSIISPWIPLFSGWMGLATCRLIQGMTQAALYPSM 551
IP G AQ+ GG+ + ++ + ++ + P P + L RL G+ Q ++P++
Sbjct: 55 IPGGWAAQRIGGRRVLLLSFVLWSLICGLIPLDPKRE--VILVLSRLFVGVAQGFIFPAI 112
Query: 552 HTMLGKWAPLSERGRLSTYVYTGSQFG 632
HT+L +W P ER R + +G G
Sbjct: 113 HTVLAQWVPPQERSRSVSLTTSGMYLG 139
>09_06_0242 -
21806370-21806483,21806574-21806660,21806865-21806917,
21806999-21807140,21807406-21807501,21808617-21808785,
21808859-21808939,21809032-21809106,21810322-21810387,
21811013-21811158,21811898-21812344
Length = 491
Score = 41.1 bits (92), Expect = 7e-04
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = +3
Query: 303 YNWNKSTQEMILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSIISP 464
Y WN ST ++ +FF GY +P G +A+ FGG+ + + + + + I P
Sbjct: 163 YGWNSSTAGLVQSSFFWGYALSQLPGGWLAKLFGGRRVLEIGVVAWSLATAIIP 216
>08_01_0370 + 3275771-3275789,3275972-3276976,3277062-3277624
Length = 528
Score = 31.1 bits (67), Expect = 0.78
Identities = 23/106 (21%), Positives = 50/106 (47%), Gaps = 3/106 (2%)
Frame = +3
Query: 285 WSVYRTYNWNKSTQEMILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVVSII-- 458
W + T + + E+ + AF Y+ M G + + + +++ +F V + +
Sbjct: 109 WLPFNTIDGSALLGEIDV-AFLAVYSVGMFFAGHLGDRMDLRIFLTIGMFGTAVFTALFG 167
Query: 459 -SPWIPLFSGWMGLATCRLIQGMTQAALYPSMHTMLGKWAPLSERG 593
W+ + + + L ++I G+ QA +PS+ ++G W S+RG
Sbjct: 168 AGYWLNIHNFYYFLVI-QMIAGLFQAIGWPSVVAIVGNWFGKSKRG 212
>03_02_0028 - 5118621-5119448
Length = 275
Score = 29.9 bits (64), Expect = 1.8
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 317 IDSRNDIVRVLRRLHHHDDPDGYNSAEIRWKISDQ 421
ID+R+ + R RRLH DP +S + W SD+
Sbjct: 100 IDARSRLRRSRRRLHRRADPVSGSSGDSGWFTSDE 134
>09_04_0713 -
19675437-19675551,19675872-19676017,19676226-19676259,
19676333-19676473,19676860-19676924,19677022-19677108,
19677186-19677254,19677457-19677548,19677781-19677853,
19678129-19678205,19678490-19678684,19678804-19678861,
19679423-19679517,19680071-19680191
Length = 455
Score = 29.5 bits (63), Expect = 2.4
Identities = 15/34 (44%), Positives = 22/34 (64%)
Frame = -2
Query: 600 SIFLFHSTVPIYPALCACSDRELLVSSLESIDMW 499
++FLF+STVPI +C + +L SL + DMW
Sbjct: 247 AMFLFYSTVPIILKICGAT---MLNLSLLTSDMW 277
>09_02_0544 - 10435796-10435852,10435944-10436288,10436477-10436971
Length = 298
Score = 29.5 bits (63), Expect = 2.4
Identities = 17/56 (30%), Positives = 24/56 (42%)
Frame = +3
Query: 30 AVYKGVPADDKYEGSSPKIPAPKGFGTRHTQALVLFICLTVAYTMRAQLSVSMVAI 197
A+ G ADD Y G +P + F + FIC T+A ++MV I
Sbjct: 228 AIPGGYKADDHYNGGTPTLAGRYIFDAFTMANTIAFICSTLAIIHLMYSGMAMVCI 283
>08_02_1602 - 28148255-28149413,28151927-28152087
Length = 439
Score = 29.1 bits (62), Expect = 3.2
Identities = 19/56 (33%), Positives = 26/56 (46%)
Frame = -3
Query: 284 GADFFCNTAGILTGAYITAEFTFCDRVTSYGYHRHAELSPHGVRHG*TYKQYQSLS 117
GA +T L A + A++T +V G+ R A L H HG YK +LS
Sbjct: 236 GATSATDTIIELDAAELLAKYTHYCQVCGKGFKRDANLRMHMRAHGDEYKSKAALS 291
>04_04_1074 + 30628192-30628456,30628924-30629144
Length = 161
Score = 29.1 bits (62), Expect = 3.2
Identities = 15/42 (35%), Positives = 23/42 (54%), Gaps = 2/42 (4%)
Frame = -2
Query: 579 TVPIYPALCACSDRELLVS--SLESIDMWPDPSIR*IKGSKG 460
T PI+P+ C + L+VS + +S WP PS+ + G G
Sbjct: 63 TTPIFPSRCDYRRKNLVVSFGAGQSTSRWPVPSLFFLPGFNG 104
>01_05_0657 + 24034198-24036306
Length = 702
Score = 29.1 bits (62), Expect = 3.2
Identities = 27/119 (22%), Positives = 53/119 (44%)
Frame = +3
Query: 270 EEISAWSVYRTYNWNKSTQEMILFAFFVGYTTMMIPMGIIAQKFGGKFPISVALFVNGVV 449
+ +SA+ + NW + E ++ +F+VG+ +M+ G + +PI V + +
Sbjct: 83 DSLSAYRLQDNDNWKRFYFEQLIHSFWVGW--LMVSSGAGSDFRYVLWPIYVIVVLKSGT 140
Query: 450 SIISPWIPLFSGWMGLATCRLIQGMTQAALYPSMHTMLGKWAPLSERGRLSTYVYTGSQ 626
I+S + + +T + MT Y + G+W P++ RG YV G +
Sbjct: 141 RILSFKLASRRSMLSESTKWVADYMT----YERELSTAGEWDPVTMRG--YRYVVAGEE 193
>12_01_0356 -
2707820-2708395,2708475-2708705,2709071-2709190,
2709281-2709401,2711588-2712027
Length = 495
Score = 27.9 bits (59), Expect = 7.3
Identities = 12/36 (33%), Positives = 21/36 (58%)
Frame = -3
Query: 407 STEFLRYYTHRDHHGGVADEEREQYHFLSRFIPVVR 300
ST L R+ GG ++EE E++ FL+ + ++R
Sbjct: 54 STGSLGIQERREEEGGESEEEEEEWSFLALLLALLR 89
>10_08_0029 + 14270945-14271364,14271449-14272486
Length = 485
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -3
Query: 212 DRVTSYGYHRHAELSPHGVRHG*TY 138
D V +G+H H SPH RH +Y
Sbjct: 198 DDVHGHGHHHHRRSSPHHPRHRRSY 222
>05_05_0156 +
22792783-22793410,22797153-22797227,22797644-22798879,
22798947-22799155,22799240-22800209,22800395-22800465
Length = 1062
Score = 27.9 bits (59), Expect = 7.3
Identities = 11/30 (36%), Positives = 16/30 (53%)
Frame = -2
Query: 570 IYPALCACSDRELLVSSLESIDMWPDPSIR 481
+ PALC ++V S E + +W SIR
Sbjct: 301 VQPALCIMDGALVVVDSFEGVTLWTKTSIR 330
>08_02_1427 -
27020819-27020918,27021017-27021081,27021160-27021246,
27021398-27021466,27022168-27022219,27022443-27022525,
27022677-27022753,27022880-27023074,27023204-27023261,
27023862-27023956,27024605-27024758
Length = 344
Score = 27.5 bits (58), Expect = 9.7
Identities = 14/34 (41%), Positives = 21/34 (61%)
Frame = -2
Query: 600 SIFLFHSTVPIYPALCACSDRELLVSSLESIDMW 499
++FLF+STVP +C + +L SL + DMW
Sbjct: 248 AMFLFYSTVPTVLKICGAT---MLNLSLLTSDMW 278
>07_01_1019 +
8714171-8714190,8714239-8714371,8714781-8714945,
8715810-8715890,8716223-8716318
Length = 164
Score = 27.5 bits (58), Expect = 9.7
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3
Query: 480 SGWMGLATCRLIQG 521
SGW + TCRLIQG
Sbjct: 39 SGWCSVLTCRLIQG 52
>04_03_0720 - 19008890-19009204,19009324-19009593
Length = 194
Score = 27.5 bits (58), Expect = 9.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = -2
Query: 129 PKLECGGCQSLLVPEFLVMTLHICHPLVPPCRQPSLLAW 13
P C C+S + P F V+ PL+P P+ L+W
Sbjct: 73 PYFTCIMCKSHVQPPFQVVVPRSFAPLLPSRTTPATLSW 111
>03_05_0897 - 28605324-28605928,28606725-28606899
Length = 259
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/49 (34%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Frame = +3
Query: 18 PGEKAVYKGVPADDKYEGSSPKIPAPKGFGTRHTQALVL-FICLTVAYT 161
PG K ++KG+P DDKY P H ++L L ++CL T
Sbjct: 175 PGAKNIFKGLP-DDKYIFPLHVFSGPDS-SPSHVRSLNLAYVCLNTTTT 221
>03_01_0530 +
3971990-3972331,3972415-3972489,3972608-3972661,
3972747-3972825,3972927-3973054,3973178-3973261,
3973344-3973427,3973518-3973669,3973810-3973960,
3974675-3974746,3975708-3975749
Length = 420
Score = 27.5 bits (58), Expect = 9.7
Identities = 21/60 (35%), Positives = 26/60 (43%), Gaps = 1/60 (1%)
Frame = -3
Query: 332 HFLSRFIPVVRTINTPGADFFCNTAGILTGAYITA-EFTFCDRVTSYGYHRHAELSPHGV 156
H +S I R+ TP D CNT I GA++ A E D + S Y SP V
Sbjct: 156 HVVSHIINEYRSGRTPNPDVLCNTR-IKFGAFLEAIENLGFDYIASGHYAHVVHPSPDDV 214
>01_06_1753 - 39664219-39665445
Length = 408
Score = 27.5 bits (58), Expect = 9.7
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = -3
Query: 215 CDRVTSYGYHRHAELSPHGVRHG*TYKQYQSL 120
CD GY RH V+ TYKQ+Q++
Sbjct: 201 CDAAAGGGYGRHHGAGGGAVKQHATYKQHQAI 232
>01_06_1723 -
39443176-39443505,39443615-39443710,39443834-39443902,
39444381-39444443,39444521-39444598,39444725-39444838,
39445727-39445804,39446457-39446522,39446739-39446804,
39446896-39447003,39447355-39447432,39447951-39448010,
39448087-39448191,39448407-39448595,39448922-39448985,
39449244-39449385,39449494-39449654,39449952-39450076,
39450230-39450300,39450410-39450560,39450713-39450769,
39451049-39451143,39451331-39451379
Length = 804
Score = 27.5 bits (58), Expect = 9.7
Identities = 17/56 (30%), Positives = 26/56 (46%)
Frame = +3
Query: 426 ALFVNGVVSIISPWIPLFSGWMGLATCRLIQGMTQAALYPSMHTMLGKWAPLSERG 593
A +VNGV SI+S IP+ + + A+L P + + K +SE G
Sbjct: 561 ARYVNGVSSILSSSIPVLGNLLSPTYFQYFLDKLAASLGPRFYLNIYKCKHISETG 616
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,171,240
Number of Sequences: 37544
Number of extensions: 420197
Number of successful extensions: 1066
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1060
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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