Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28o06
(249 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein. 35 0.009
AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin con... 35 0.009
U58747-2|AAQ91905.1| 393|Caenorhabditis elegans Hypothetical pr... 30 0.19
Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical pr... 26 3.1
Z69361-1|CAE17943.1| 468|Caenorhabditis elegans Hypothetical pr... 26 3.1
AF025467-9|AAB71041.2| 228|Caenorhabditis elegans Hypothetical ... 26 3.1
AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin co... 26 3.1
Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical pr... 26 4.1
Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical p... 26 4.1
U28971-5|AAA68379.1| 982|Caenorhabditis elegans Hypothetical pr... 26 4.1
AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein. 26 4.1
Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical pr... 25 5.4
Z37092-8|CAA85460.2| 327|Caenorhabditis elegans Hypothetical pr... 25 5.4
S56051-1|AAB25489.2| 147|Caenorhabditis elegans ubiquitin-conju... 25 5.4
AY037792-1|AAK94756.1| 327|Caenorhabditis elegans SRA-12 protein. 25 5.4
AL132902-11|CAC70125.2| 205|Caenorhabditis elegans Hypothetical... 25 5.4
Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical pr... 25 7.1
Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical pr... 25 7.1
U41540-9|AAM54185.1| 159|Caenorhabditis elegans Hypothetical pr... 25 7.1
AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical... 25 7.1
AC024881-9|AAK71410.1| 588|Caenorhabditis elegans Hypothetical ... 25 7.1
Z92834-10|CAB07393.1| 439|Caenorhabditis elegans Hypothetical p... 25 9.4
U00052-4|AAK21419.2| 438|Caenorhabditis elegans Hypothetical pr... 25 9.4
AF098996-7|AAC68708.2| 382|Caenorhabditis elegans Serpentine re... 25 9.4
>U08139-1|AAA83388.1| 192|Caenorhabditis elegans ubc-1 protein.
Length = 192
Score = 34.7 bits (76), Expect = 0.009
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 33 EPNPEDPLNKEAADELQSNRRLFEQHVQRAMRGGYV 140
EPNP P N AA Q NRR +E+ VQ+ + ++
Sbjct: 115 EPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSWL 150
>AF045638-8|AAC02561.2| 192|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein1 protein.
Length = 192
Score = 34.7 bits (76), Expect = 0.009
Identities = 15/36 (41%), Positives = 21/36 (58%)
Frame = +3
Query: 33 EPNPEDPLNKEAADELQSNRRLFEQHVQRAMRGGYV 140
EPNP P N AA Q NRR +E+ VQ+ + ++
Sbjct: 115 EPNPNSPANSLAAQLYQENRREYEKRVQQIVEQSWL 150
>U58747-2|AAQ91905.1| 393|Caenorhabditis elegans Hypothetical
protein C55F2.1c protein.
Length = 393
Score = 30.3 bits (65), Expect = 0.19
Identities = 14/41 (34%), Positives = 23/41 (56%)
Frame = +3
Query: 9 RILSLSFTEPNPEDPLNKEAADELQSNRRLFEQHVQRAMRG 131
RI S+++ P P+N ++ QSN RLF++ + RG
Sbjct: 3 RISSMAYKWKQPPPPINDDSRHRSQSNSRLFDRIYGQMHRG 43
>Z79598-1|CAB01867.3| 586|Caenorhabditis elegans Hypothetical
protein C44H4.1 protein.
Length = 586
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/30 (36%), Positives = 18/30 (60%)
Frame = +1
Query: 4 NNAYSLFHSRNQTLKIPSTRKQLTSSKATG 93
+NA+ +HSR+ LK+ + LT+ TG
Sbjct: 149 DNAFLSYHSRDSLLKLDLSANNLTAIHPTG 178
>Z69361-1|CAE17943.1| 468|Caenorhabditis elegans Hypothetical
protein T13H10.2 protein.
Length = 468
Score = 26.2 bits (55), Expect = 3.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = +1
Query: 67 QLTSSKATGDFSNNTFRELCEAATSAHLISN 159
++++ K GDFS+ + R+ EAA + L N
Sbjct: 325 KISTDKRLGDFSDFSIRQTIEAAKAEELTGN 355
>AF025467-9|AAB71041.2| 228|Caenorhabditis elegans Hypothetical
protein R148.7 protein.
Length = 228
Score = 26.2 bits (55), Expect = 3.1
Identities = 20/68 (29%), Positives = 25/68 (36%), Gaps = 4/68 (5%)
Frame = +1
Query: 16 SLFHSRNQTLKIPSTRKQLTSSKATGDFSNN----TFRELCEAATSAHLISNDASNENLH 183
SL S + KIP + QL D ++ T+ TS S ENLH
Sbjct: 106 SLILSGSSPSKIPRPKAQLVYLNVNNDIISDDPTSTYEPTSFTPTSGSFTHTSTSGENLH 165
Query: 184 TCKKC*QP 207
T QP
Sbjct: 166 TMPNELQP 173
>AC024817-43|AAK93865.2| 151|Caenorhabditis elegans Ubiquitin
conjugating enzyme protein13 protein.
Length = 151
Score = 26.2 bits (55), Expect = 3.1
Identities = 9/18 (50%), Positives = 14/18 (77%)
Frame = +3
Query: 36 PNPEDPLNKEAADELQSN 89
PNPEDPL + A++ ++N
Sbjct: 116 PNPEDPLATDVAEQWKTN 133
>Z67755-5|CAA91758.2| 966|Caenorhabditis elegans Hypothetical
protein F54F7.5 protein.
Length = 966
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +1
Query: 46 KIPSTRKQLTSSKATG---DFSNNTFRELCEAATSAH 147
K T++QLT+++ D SNNT LC+ ++H
Sbjct: 40 KFGETKEQLTNAETISLEYDVSNNTEFSLCKLGCNSH 76
>Z22179-13|CAA80166.1| 164|Caenorhabditis elegans Hypothetical
protein F58A4.10 protein.
Length = 164
Score = 25.8 bits (54), Expect = 4.1
Identities = 12/33 (36%), Positives = 19/33 (57%)
Frame = +3
Query: 30 TEPNPEDPLNKEAADELQSNRRLFEQHVQRAMR 128
T+PN E P N +AA + N F++ V + +R
Sbjct: 127 TDPNFESPANVDAAKMQRENYAEFKKKVAQCVR 159
>U28971-5|AAA68379.1| 982|Caenorhabditis elegans Hypothetical
protein B0244.6 protein.
Length = 982
Score = 25.8 bits (54), Expect = 4.1
Identities = 9/31 (29%), Positives = 17/31 (54%)
Frame = -3
Query: 244 FLTLK*DFIIIYMVVSIFYTCAGFHLRHRSK 152
F+ + F+I +++S + C FH+R K
Sbjct: 813 FIIVSFAFLITIIILSFVFICLSFHIRKAKK 843
>AF200199-1|AAF13716.1| 966|Caenorhabditis elegans MES-1 protein.
Length = 966
Score = 25.8 bits (54), Expect = 4.1
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 3/37 (8%)
Frame = +1
Query: 46 KIPSTRKQLTSSKATG---DFSNNTFRELCEAATSAH 147
K T++QLT+++ D SNNT LC+ ++H
Sbjct: 40 KFGETKEQLTNAETISLEYDVSNNTEFSLCKLGCNSH 76
>Z68337-1|CAA92745.1| 147|Caenorhabditis elegans Hypothetical
protein M7.1 protein.
Length = 147
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 33 EPNPEDPLNKEAADELQSNRRLFEQ 107
+PNP+DPL E A +++R + Q
Sbjct: 112 DPNPDDPLVPEIARIYKTDRERYNQ 136
>Z37092-8|CAA85460.2| 327|Caenorhabditis elegans Hypothetical
protein F44F4.7 protein.
Length = 327
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 106 NTFRELCEAATSAHLISN 159
NTF E+C T AH+I N
Sbjct: 184 NTFLEICSYLTVAHIIIN 201
>S56051-1|AAB25489.2| 147|Caenorhabditis elegans
ubiquitin-conjugating enzyme protein.
Length = 147
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +3
Query: 33 EPNPEDPLNKEAADELQSNRRLFEQ 107
+PNP+DPL E A +++R + Q
Sbjct: 112 DPNPDDPLVPEIARIYKTDRERYNQ 136
>AY037792-1|AAK94756.1| 327|Caenorhabditis elegans SRA-12 protein.
Length = 327
Score = 25.4 bits (53), Expect = 5.4
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 106 NTFRELCEAATSAHLISN 159
NTF E+C T AH+I N
Sbjct: 184 NTFLEICSYLTVAHIIIN 201
>AL132902-11|CAC70125.2| 205|Caenorhabditis elegans Hypothetical
protein Y71A12B.13a protein.
Length = 205
Score = 25.4 bits (53), Expect = 5.4
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +1
Query: 52 PSTRKQLTSSKATGDFSN-NTFRELCEAATSAHLISND 162
PS R TS + +GDFSN ++FR A + L S D
Sbjct: 40 PSNRTMGTSIQISGDFSNLSSFRPENSAISEIVLDSGD 77
>Z81062-7|CAB02942.1| 755|Caenorhabditis elegans Hypothetical
protein F15A4.8a protein.
Length = 755
Score = 25.0 bits (52), Expect = 7.1
Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
Frame = +1
Query: 22 FHSRNQTLKIPSTR-KQLTSSKATGDFSNNTFRELCEAATSAHLIS 156
F + N T I + ++LT + F N+TFR+ ++A + L+S
Sbjct: 458 FFTGNSTTSITQDQMRKLTHATFCRIFLNSTFRDAAKSANTKTLVS 503
>Z79603-5|CAB01891.1| 435|Caenorhabditis elegans Hypothetical
protein M163.5 protein.
Length = 435
Score = 25.0 bits (52), Expect = 7.1
Identities = 13/38 (34%), Positives = 22/38 (57%)
Frame = -2
Query: 128 SHSSLNVLFEKSPVALELVSCFLVEGIFRVWFRE*KRE 15
SH SLN +FE V + + F ++ I+++ + KRE
Sbjct: 382 SHVSLNKMFENKIVEMFHATMFSMDQIYQIETLKTKRE 419
>Z48543-1|CAA88432.1| 645|Caenorhabditis elegans Hypothetical
protein C18D1.1 protein.
Length = 645
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 34 NQTLKIPSTRKQLTSSKATGDFSNNT 111
N T K T+K++ KATG+ N+
Sbjct: 547 NLTFKNDGTKKEIEEEKATGNHERNS 572
>U41540-9|AAM54185.1| 159|Caenorhabditis elegans Hypothetical
protein F35H12.7 protein.
Length = 159
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/15 (66%), Positives = 10/15 (66%)
Frame = +3
Query: 126 RGGYVGTSYFERCLK 170
RG Y GT YF RC K
Sbjct: 136 RGVYPGTLYFRRCSK 150
>AL110500-10|CAB60431.1| 170|Caenorhabditis elegans Hypothetical
protein Y87G2A.9 protein.
Length = 170
Score = 25.0 bits (52), Expect = 7.1
Identities = 12/32 (37%), Positives = 16/32 (50%)
Frame = +3
Query: 33 EPNPEDPLNKEAADELQSNRRLFEQHVQRAMR 128
EPN E P N AA + +R FE+ +R
Sbjct: 129 EPNDESPANVSAAKMWREDRAQFEKIADSLVR 160
>AC024881-9|AAK71410.1| 588|Caenorhabditis elegans Hypothetical
protein Y97E10B.1 protein.
Length = 588
Score = 25.0 bits (52), Expect = 7.1
Identities = 10/24 (41%), Positives = 16/24 (66%)
Frame = -2
Query: 173 SFEASFEIRCADVAASHSSLNVLF 102
SF+ +I+C V A+H S++ LF
Sbjct: 544 SFQQHPKIKCMHVNATHDSMDTLF 567
>Z92834-10|CAB07393.1| 439|Caenorhabditis elegans Hypothetical
protein F39B2.7 protein.
Length = 439
Score = 24.6 bits (51), Expect = 9.4
Identities = 16/46 (34%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = -2
Query: 179 RFSFEASFEIRCADVAASHSSLNVLFEKSPVALE-LVSCFLVEGIF 45
R SFE + C D A S L V E+ E +V+ +++GIF
Sbjct: 387 RCSFELESAVTCNDAAIMCSHLEVALEQIGELTEGIVTESVLDGIF 432
>U00052-4|AAK21419.2| 438|Caenorhabditis elegans Hypothetical
protein K02F3.7 protein.
Length = 438
Score = 24.6 bits (51), Expect = 9.4
Identities = 8/15 (53%), Positives = 13/15 (86%)
Frame = +3
Query: 33 EPNPEDPLNKEAADE 77
EPNP+DP N++ A++
Sbjct: 360 EPNPDDPHNRDHANK 374
>AF098996-7|AAC68708.2| 382|Caenorhabditis elegans Serpentine
receptor, class w protein60 protein.
Length = 382
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/39 (30%), Positives = 20/39 (51%)
Frame = -2
Query: 176 FSFEASFEIRCADVAASHSSLNVLFEKSPVALELVSCFL 60
FSF SF +R + + AS SL+ + + + CF+
Sbjct: 294 FSFIRSFYLRFSSIEASVESLDKMLINLVIVNVIAHCFI 332
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,916,519
Number of Sequences: 27780
Number of extensions: 81212
Number of successful extensions: 285
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 285
length of database: 12,740,198
effective HSP length: 62
effective length of database: 11,017,838
effective search space used: 220356760
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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