Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28o06
         (249 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex det...    21   1.7  
DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex det...    21   1.7  
DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex det...    21   1.7  
DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex det...    21   1.7  
DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex det...    21   1.7  
DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex det...    21   1.7  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   1.7  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    20   4.0  

>DQ325130-1|ABD14144.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 46  KIPSTRKQLTSSKATGDFSNNTFRELC 126
           K P     L+++    +++NN +++LC
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLC 103


>DQ325129-1|ABD14143.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 46  KIPSTRKQLTSSKATGDFSNNTFRELC 126
           K P     L+++    +++NN +++LC
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLC 103


>DQ325128-1|ABD14142.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 46  KIPSTRKQLTSSKATGDFSNNTFRELC 126
           K P     L+++    +++NN +++LC
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLC 103


>DQ325127-1|ABD14141.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 46  KIPSTRKQLTSSKATGDFSNNTFRELC 126
           K P     L+++    +++NN +++LC
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLC 103


>DQ325126-1|ABD14140.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 46  KIPSTRKQLTSSKATGDFSNNTFRELC 126
           K P     L+++    +++NN +++LC
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLC 103


>DQ325125-1|ABD14139.1|  174|Apis mellifera complementary sex
           determiner protein.
          Length = 174

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 7/27 (25%), Positives = 16/27 (59%)
 Frame = +1

Query: 46  KIPSTRKQLTSSKATGDFSNNTFRELC 126
           K P     L+++    +++NN +++LC
Sbjct: 77  KEPKIISSLSNNYNYSNYNNNNYKQLC 103


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 1.7
 Identities = 8/20 (40%), Positives = 9/20 (45%)
 Frame = +1

Query: 103 NNTFRELCEAATSAHLISND 162
           N    ELC      H+IS D
Sbjct: 264 NEDLEELCRGCNLGHMISYD 283


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 20.2 bits (40), Expect = 4.0
 Identities = 13/40 (32%), Positives = 18/40 (45%), Gaps = 6/40 (15%)
 Frame = +1

Query: 28  SRNQTLKIPSTRKQLTSSKATG------DFSNNTFRELCE 129
           SR QT+   S+  Q+T  +  G         NNT   LC+
Sbjct: 95  SRKQTIDPLSSNTQITRKRRVGIVENQYAVENNTGSSLCD 134


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 59,073
Number of Sequences: 438
Number of extensions: 946
Number of successful extensions: 8
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 47
effective length of database: 125,757
effective search space used:  4401495
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 37 (19.9 bits)