Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28o05
         (611 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    25   0.77 
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    23   1.8  
AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic ac...    22   4.1  
AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.     21   7.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    21   7.2  

>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 24.6 bits (51), Expect = 0.77
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +3

Query: 480 AQLFMGMAHSCFSTVYETLIERWL 551
           A   +G+    FS +YE L  RWL
Sbjct: 90  ADCLVGLVVMPFSAIYEVLENRWL 113


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 324 FFGYAVMLVPADLLLRKIGGKIVCTAIFVVNGALCVAM 437
           FF   V ++P   L+  + GK +  A+ +V+ ++CV +
Sbjct: 289 FFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTV 326



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 236 GQYSNTYAPPH*SNDDSSNEHI 171
           G+    Y P H S  + S EH+
Sbjct: 383 GKEKTCYYPYHPSTQEDSEEHL 404


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 324 FFGYAVMLVPADLLLRKIGGKIVCTAIFVVNGALCVAM 437
           FF   V ++P   L+  + GK +  A+ +V+ ++CV +
Sbjct: 289 FFLLVVEIIPPTSLVVPLLGKYLIFAMILVSISICVTV 326



 Score = 21.0 bits (42), Expect = 9.5
 Identities = 8/22 (36%), Positives = 11/22 (50%)
 Frame = -1

Query: 236 GQYSNTYAPPH*SNDDSSNEHI 171
           G+    Y P H S  + S EH+
Sbjct: 383 GKEKTCYYPYHPSTQEDSEEHL 404


>AY569781-1|AAS75781.1|  461|Apis mellifera neuronal nicotinic
           acetylcholine Apisa7-2 subunit protein.
          Length = 461

 Score = 22.2 bits (45), Expect = 4.1
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 474 SNAQLFMGMAHSCFSTVYETLIERWLPPNERNTYSHFIYG 593
           S  ++ +G++     TV+   I   LPP E+       YG
Sbjct: 241 SGEKVTLGISALLSMTVFLMTIRESLPPTEKTPLISLYYG 280


>AY268030-1|AAP23055.1|  602|Apis mellifera dorsal protein protein.
          Length = 602

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 11/45 (24%), Positives = 23/45 (51%)
 Frame = -2

Query: 436 IATHRAPLTTNMAVQTIFPPIFLSNKSAGTSITAYPKKNDDITAP 302
           I+ +  P+ +  +  +++P    S +S  T  T  P+ + D T+P
Sbjct: 379 ISPYGYPIGSGGSFPSLYPMATTSPQSQSTIQTLRPQVSPDRTSP 423


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 21.4 bits (43), Expect = 7.2
 Identities = 12/48 (25%), Positives = 23/48 (47%)
 Frame = +3

Query: 87  LRYQFSDGYTGVISKQRFKVGIRHVQILYMFVGAIVIGLVRGSIGVAV 230
           L  Q  DG+      +     +    ++ + +G+I++G V G+I V V
Sbjct: 17  LTTQDVDGFLQGFPGKNSPYTVTQAILIALVLGSIIVGTVIGNILVCV 64


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,157
Number of Sequences: 438
Number of extensions: 4212
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18093444
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)