Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28n19
(563 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subun... 108 5e-25
SPBC1347.06c |cki1||serine/threonine protein kinase Cki1|Schizos... 29 0.62
SPBP35G2.05c |cki2||serine/threonine protein kinase Cki2|Schizos... 27 1.4
SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual 26 3.3
SPBC19C7.08c |||leucine carboxyl methyltransferase|Schizosacchar... 26 3.3
SPCC126.07c |||human CTD-binding SR-like protein rA9 homolog|Sch... 26 3.3
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 26 3.3
SPAC13G6.06c |||glycine cleavage complex subunit P|Schizosacchar... 25 5.8
SPBC211.06 |gfh1||gamma tubulin complex subunit Gfh1|Schizosacch... 25 7.7
SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde reduc... 25 7.7
>SPBC11B10.01 |alg2|SPBC32H8.14|mannosyltransferase complex subunit
Alg2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 511
Score = 108 bits (260), Expect = 5e-25
Identities = 54/121 (44%), Positives = 67/121 (55%)
Frame = +3
Query: 177 TMVKILFLHPDLGIGGAERLVVDAALAFQKKGHEVAFYTNHHDPTHCFAETRDGTFRVTV 356
T +KI F+HPDLGIGGAERLVVDAA+ Q G EV +T+H D HCF E RDGT +V V
Sbjct: 15 TPIKIAFIHPDLGIGGAERLVVDAAVGLQSLGKEVVVFTSHCDKKHCFEEIRDGTIKVKV 74
Query: 357 VGDWIPRSILGRFKXXXXXXXXXXXXXXXXXXXXPNEEPLLIFCDSISLCIPFLKMAPRT 536
GDW+P SI GR + I D +S C+PFL +A +
Sbjct: 75 YGDWLPSSIFGRLSIFCSSLRQVYLTMILLTNYMHFD---AIIVDQLSTCVPFLLLASQM 131
Query: 537 V 539
+
Sbjct: 132 I 132
>SPBC1347.06c |cki1||serine/threonine protein kinase
Cki1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 446
Score = 28.7 bits (61), Expect = 0.62
Identities = 11/19 (57%), Positives = 14/19 (73%)
Frame = -3
Query: 561 VAVKYDPERSSEPSLRMEY 505
VA+K++P RS P LR EY
Sbjct: 38 VAIKFEPRRSDAPQLRDEY 56
>SPBP35G2.05c |cki2||serine/threonine protein kinase
Cki2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 27.5 bits (58), Expect = 1.4
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -3
Query: 561 VAVKYDPERSSEPSLRMEY 505
+A+K++P++S P LR EY
Sbjct: 38 IAIKFEPKKSEAPQLRDEY 56
>SPBC409.19c |||metaxin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 450
Score = 26.2 bits (55), Expect = 3.3
Identities = 15/38 (39%), Positives = 19/38 (50%), Gaps = 5/38 (13%)
Frame = +3
Query: 6 SKIIYNLRPTSVDLLYYP-----AILKILAIVVLHPCL 104
SK I+ +PTS+D L+Y A L L PCL
Sbjct: 210 SKFIFGEKPTSLDCLFYAYLSFHAFTNELPQATLRPCL 247
>SPBC19C7.08c |||leucine carboxyl
methyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 681
Score = 26.2 bits (55), Expect = 3.3
Identities = 10/30 (33%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
Frame = +1
Query: 121 WMFLF-VQMCN*IELVYPLEQW*KYFFFIQ 207
W FL ++ + E+V P ++W +++FF+Q
Sbjct: 282 WNFLMDSKLKHLCEMVEPFDEWEEFYFFLQ 311
>SPCC126.07c |||human CTD-binding SR-like protein rA9
homolog|Schizosaccharomyces pombe|chr 3|||Manual
Length = 571
Score = 26.2 bits (55), Expect = 3.3
Identities = 16/38 (42%), Positives = 20/38 (52%)
Frame = +2
Query: 164 CILLNNGENTFSSSRLGYRRC*ATCSRCRIGVSEERSR 277
C+LLN EN SSR+ R T R R+G + SR
Sbjct: 167 CVLLNYQENETLSSRISLSRRGQT-RRRRVGAAARASR 203
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 26.2 bits (55), Expect = 3.3
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = +3
Query: 264 KKGHEVAFYTNHHDPTHCFAETRDGTFRVT 353
+ G + YT H +P C A T DG VT
Sbjct: 356 RSGQLLGEYTGHQEPILCMAITPDGKRVVT 385
>SPAC13G6.06c |||glycine cleavage complex subunit
P|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1017
Score = 25.4 bits (53), Expect = 5.8
Identities = 14/47 (29%), Positives = 20/47 (42%)
Frame = -1
Query: 470 FFIRNNVPCHISSCINHTYIGTCSLKSSQNGPGYPIANNRNTKCTIT 330
F+ + P + N Y T LKS+ GY I N + T+T
Sbjct: 396 FYAIYHGPNGLQEIANRIYASTSFLKSALESSGYKIVNKSHFFDTLT 442
>SPBC211.06 |gfh1||gamma tubulin complex subunit
Gfh1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 577
Score = 25.0 bits (52), Expect = 7.7
Identities = 10/32 (31%), Positives = 18/32 (56%)
Frame = +2
Query: 131 YLYKCVIK*NWCILLNNGENTFSSSRLGYRRC 226
Y Y+CVIK ++C L + + + +L + C
Sbjct: 464 YAYECVIKPSYCKLRESLTELYRTQKLRMQDC 495
>SPAC19G12.09 |||NADH/NADPH dependent indole-3-acetaldehyde
reductase AKR3C2|Schizosaccharomyces pombe|chr
1|||Manual
Length = 284
Score = 25.0 bits (52), Expect = 7.7
Identities = 15/55 (27%), Positives = 28/55 (50%)
Frame = -3
Query: 258 TPMRHRLQVAQHRRYPSLDEEKVFSPLFKRIHQFYLITHLYK*EHPVLQYNVNKG 94
T + H + V+ R P L+E S + R++Q +YK P++++ +KG
Sbjct: 134 TGLVHSVGVSNFR-IPDLEELLKTSTITPRVNQIEFHPQVYKAAKPLVEFCQSKG 187
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,486,161
Number of Sequences: 5004
Number of extensions: 53106
Number of successful extensions: 117
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 111
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 238029836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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