Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28n18
         (469 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex det...    23   1.2  
AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex det...    22   3.8  
DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex det...    21   6.6  
AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.       21   6.6  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    21   8.7  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    21   8.7  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   8.7  

>AY350618-1|AAQ57660.1|  425|Apis mellifera complementary sex
           determiner protein.
          Length = 425

 Score = 23.4 bits (48), Expect = 1.2
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 436 NNTYKIYTNYSS*YNGMI*HIY 371
           NN Y  Y NY++ YN     +Y
Sbjct: 331 NNNYNNYNNYNNNYNNNYKKLY 352



 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 445 LHQNNTYKIYTNYSS*YN 392
           L  N  Y  Y NY++ YN
Sbjct: 318 LSNNYKYSNYNNYNNNYN 335


>AY569694-1|AAS86647.1|  400|Apis mellifera complementary sex
           determiner protein.
          Length = 400

 Score = 21.8 bits (44), Expect = 3.8
 Identities = 8/18 (44%), Positives = 9/18 (50%)
 Frame = -1

Query: 445 LHQNNTYKIYTNYSS*YN 392
           +H NN Y  Y N    YN
Sbjct: 312 IHNNNNYNNYNNKKLYYN 329


>DQ325103-1|ABD14117.1|  182|Apis mellifera complementary sex
           determiner protein.
          Length = 182

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 445 LHQNNTYKIYTNYSS*YN 392
           L  N  Y  Y NY++ YN
Sbjct: 85  LSNNYNYSNYNNYNNNYN 102


>AY898652-1|AAX83121.1|  349|Apis mellifera AKH receptor protein.
          Length = 349

 Score = 21.0 bits (42), Expect = 6.6
 Identities = 9/28 (32%), Positives = 14/28 (50%)
 Frame = -2

Query: 129 CNLESYFRHFKLYTN*KIYVQFRFPIYY 46
           C + ++FR F LY +  + V      YY
Sbjct: 111 CRIMAFFRMFGLYLSSFVLVCISMDRYY 138


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 445 LHQNNTYKIYTNYSS*YN 392
           L  N  Y  Y NY++ YN
Sbjct: 85  LSNNYKYSNYNNYNNNYN 102


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -1

Query: 445 LHQNNTYKIYTNYSS*YN 392
           L  N  Y  Y NY++ YN
Sbjct: 85  LSNNYKYSNYNNYNNNYN 102


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 20.6 bits (41), Expect = 8.7
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +1

Query: 85  ICV*FKMSKVTFKITLTSDPKLPFKVL 165
           IC+  K +++ FKI +T D    F  L
Sbjct: 514 ICLKEKENEIDFKIEVTEDCNKSFNDL 540


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,107
Number of Sequences: 438
Number of extensions: 2747
Number of successful extensions: 8
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12559158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)