Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28n17
         (412 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit S2|S...    27   1.1  
SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase Wis4|Schizo...    27   1.5  
SPAC4F10.09c |||ribosome biogenesis protein Noc1 |Schizosaccharo...    26   2.6  
SPBC887.10 |mcs4||two-component response regulator |Schizosaccha...    26   2.6  
SPAC22F8.07c |rtf1||replication termination factor Rtf1|Schizosa...    25   3.5  
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po...    25   3.5  
SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex lar...    25   6.1  
SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces pombe...    25   6.1  

>SPAC24C9.10c |mrp4||mitochondrial ribosomal protein subunit
           S2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 27.1 bits (57), Expect = 1.1
 Identities = 14/38 (36%), Positives = 20/38 (52%)
 Frame = -3

Query: 272 KEWSGHIGAFRVYDEQPRPEDDNYSPDRVLSMPILLSS 159
           ++W+  IGA       P     N +P   LS+P+LLSS
Sbjct: 19  RDWNHKIGAVVAPHYSPTLSIRNPAPPSQLSLPLLLSS 56


>SPAC9G1.02 |wis4|wak1, wik1|MAP kinase kinase kinase
           Wis4|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1401

 Score = 26.6 bits (56), Expect = 1.5
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 82  YPNVSRPNLSYHSSKCNTSAPRHHF 8
           YP++SRP  S  S K  T AP  ++
Sbjct: 139 YPHISRPRTSSDSQKMYTRAPVDYY 163


>SPAC4F10.09c |||ribosome biogenesis protein Noc1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 253 IWPLHSFLIHFHTGIKQIA 309
           +W +H FL HFH  +  +A
Sbjct: 590 LWEIHPFLNHFHPTVSLLA 608


>SPBC887.10 |mcs4||two-component response regulator
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 522

 Score = 25.8 bits (54), Expect = 2.6
 Identities = 12/42 (28%), Positives = 20/42 (47%)
 Frame = -1

Query: 130 YSELLNRILNNPCK*QYPNVSRPNLSYHSSKCNTSAPRHHFS 5
           +SE    I+  P     P + +P+++  S +   SAP  H S
Sbjct: 121 FSEYPPNIIPTPANETVPRIKQPSIALDSLESPVSAPSRHQS 162


>SPAC22F8.07c |rtf1||replication termination factor
           Rtf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 466

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 3/74 (4%)
 Frame = +3

Query: 174 RHAEYSVWGV--IVILWSRLLVINPERSNMATPLLSYSFSHRYKTDRARIA-CLYVYID* 344
           + A    WG   I+ L   + +   +++      L Y +S  ++ +   +  CLY  ID 
Sbjct: 178 KKASSGSWGANDIITLEKEIAMFKKKKNWSDEQFLQYVWSDNHRDEMKTLYNCLYELIDR 237

Query: 345 *VYNCYNLIVCKYN 386
              + YN +  KYN
Sbjct: 238 DKKSIYNYLRRKYN 251


>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 833

 Score = 25.4 bits (53), Expect = 3.5
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = -2

Query: 345 INLCIRTDKLFWRDLFYTCVKMNKKGVEWPYWSVQ 241
           I L   T +LF R+L Y+C + + K +  P+  ++
Sbjct: 316 IQLISETKRLFLRNLTYSCAEDDLKSLFGPFGQLE 350


>SPBC4C3.05c |nuc1|rpa1|DNA-directed RNA polymerase I complex large
           subunit Nuc1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1689

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 139 LYNYSELLNRILNNPCK 89
           LYN++E+ N ++N P K
Sbjct: 521 LYNFNEMRNAVINGPHK 537


>SPBC1289.04c |pob1||Boi family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 871

 Score = 24.6 bits (51), Expect = 6.1
 Identities = 11/18 (61%), Positives = 12/18 (66%)
 Frame = -1

Query: 70  SRPNLSYHSSKCNTSAPR 17
           S P L YHSSK N  AP+
Sbjct: 475 SFPGLPYHSSKGNLYAPQ 492


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,678,899
Number of Sequences: 5004
Number of extensions: 32828
Number of successful extensions: 87
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 142254980
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)