Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28n17
         (412 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like recept...    26   0.19 
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            23   1.4  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    23   1.8  
AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex det...    22   2.4  
DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex det...    22   3.1  
DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex det...    22   3.1  
AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine beta-sy...    21   5.4  
AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor typ...    21   7.2  
AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor pr...    20   9.5  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      20   9.5  

>DQ869051-1|ABJ09598.1|  581|Apis mellifera pyrokinin-like receptor
           2 protein.
          Length = 581

 Score = 25.8 bits (54), Expect = 0.19
 Identities = 18/54 (33%), Positives = 24/54 (44%), Gaps = 5/54 (9%)
 Frame = -1

Query: 187 YSACLSYYLHTETNYVLYN-----YSELLNRILNNPCK*QYPNVSRPNLSYHSS 41
           Y + + YYL T  N +LYN     + E    +L N C       S P  S +SS
Sbjct: 331 YMSGVFYYLSTTVNPLLYNIMSNKFREAFKLMLPNCCGKWSSQKSEPRRSIYSS 384


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 23.0 bits (47), Expect = 1.4
 Identities = 11/35 (31%), Positives = 17/35 (48%)
 Frame = +3

Query: 195 WGVIVILWSRLLVINPERSNMATPLLSYSFSHRYK 299
           WG +    S + V N +       +L+Y +S RYK
Sbjct: 293 WGFLPSKDSLVFVDNHDTQRDNPQILTYKYSKRYK 327


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 22.6 bits (46), Expect = 1.8
 Identities = 11/25 (44%), Positives = 13/25 (52%)
 Frame = -1

Query: 184 SACLSYYLHTETNYVLYNYSELLNR 110
           S CL YY  T  N +LYN   +  R
Sbjct: 313 SGCL-YYFSTTINPILYNLMSIKYR 336


>AY569704-1|AAS86657.1|  426|Apis mellifera complementary sex
           determiner protein.
          Length = 426

 Score = 22.2 bits (45), Expect = 2.4
 Identities = 14/51 (27%), Positives = 21/51 (41%)
 Frame = -1

Query: 250 ERSGFMTSNRDQRMTITPQTEYSACLSYYLHTETNYVLYNYSELLNRILNN 98
           ERS   + +R +R         S+  +  +H   NY   NY+   N   NN
Sbjct: 294 ERSKERSRDRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNNYNNYNNN 344


>DQ325132-1|ABD14146.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -1

Query: 250 ERSGFMTSNRDQRMTITPQTEYSACLSYYLHTETNYVLYNYSELLNRILNNPCK*QYPN 74
           E S   + +R +R T       S+  + Y ++  N    NY+   N   NN  K  Y N
Sbjct: 61  ETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKN 119


>DQ325131-1|ABD14145.1|  189|Apis mellifera complementary sex
           determiner protein.
          Length = 189

 Score = 21.8 bits (44), Expect = 3.1
 Identities = 16/59 (27%), Positives = 24/59 (40%)
 Frame = -1

Query: 250 ERSGFMTSNRDQRMTITPQTEYSACLSYYLHTETNYVLYNYSELLNRILNNPCK*QYPN 74
           E S   + +R +R T       S+  + Y ++  N    NY+   N   NN  K  Y N
Sbjct: 61  ETSKERSQDRTERETSKEPKIISSLSNNYKYSNYNNYNNNYNNNYNNNYNNNYKKLYKN 119


>AB244761-1|BAE66603.1|  504|Apis mellifera cystathionine
           beta-synthase protein.
          Length = 504

 Score = 21.0 bits (42), Expect = 5.4
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +1

Query: 76  SDTVICTDYLIFYLVVHYNYIKHN 147
           S  V CTD++   +V  Y  +KH+
Sbjct: 429 SGIVKCTDFVDKAMVKQYVKVKHS 452


>AF498306-5|AAM19330.1|  456|Apis mellifera dopamine receptor type
           D2 protein.
          Length = 456

 Score = 20.6 bits (41), Expect = 7.2
 Identities = 7/8 (87%), Positives = 7/8 (87%)
 Frame = -1

Query: 166 YLHTETNY 143
           YLHT TNY
Sbjct: 75  YLHTATNY 82


>AM076717-1|CAJ28210.1|  501|Apis mellifera serotonin receptor
           protein.
          Length = 501

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/20 (40%), Positives = 12/20 (60%)
 Frame = +1

Query: 319 LVCTYT*INKCIIVIT*LCA 378
           L CT + +N C+I +   CA
Sbjct: 123 LSCTASILNLCMISVDRFCA 142


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 20.2 bits (40), Expect = 9.5
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = -3

Query: 224 PRPEDDNYSPDRVLSMPI 171
           P P D+     RVLS P+
Sbjct: 184 PDPHDETAKKPRVLSPPL 201


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 115,096
Number of Sequences: 438
Number of extensions: 2841
Number of successful extensions: 10
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10379628
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)