Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28n12
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3 |Schizosa...    27   2.2  
SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C |Schizosaccharom...    26   2.9  
SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase |Schizosa...    26   3.8  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   3.8  
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1...    25   5.0  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   5.0  
SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein Sap155|Sc...    25   6.6  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    25   6.6  
SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase Shk1|Schizosacc...    25   8.7  
SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces pombe...    25   8.7  
SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde d...    25   8.7  

>SPAC167.07c ||SPAC57A7.03c|ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1029

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -1

Query: 452 LRKNNGGISNDYGRNFRTINNDYGIR 375
           L+  +G + ND   NF  ++ ++G+R
Sbjct: 818 LKNYDGDVENDMALNFTVVHEEFGVR 843


>SPBC12D12.04c |pck2|sts6, pkc1|protein kinase C
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1016

 Score = 26.2 bits (55), Expect = 2.9
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +3

Query: 402 PEVTPVIIADPAIVLPEPVIVAPIEPTPV 488
           P +TP   ADP    P+P+ + P++  PV
Sbjct: 586 PSITP---ADPVPTSPKPLAIEPVKRKPV 611


>SPBC577.13 |syj2||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 889

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 13/21 (61%), Positives = 17/21 (80%), Gaps = 1/21 (4%)
 Frame = -2

Query: 487 TGVGSIGATITGSGR-TMAGS 428
           TGVGSIG++ T  GR ++AGS
Sbjct: 483 TGVGSIGSSATRRGRKSIAGS 503


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 18/42 (42%), Positives = 23/42 (54%)
 Frame = +2

Query: 218  PRSSFPSRHWSHRPRPGFSPSSDYC*CKPSINSLSRRNKSRA 343
            PRSS PS H +  P P    SS      P+  S+S R+KS+A
Sbjct: 1252 PRSSVPSPHSNASPSP---TSSSMASAAPARTSVS-RSKSKA 1289


>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 857

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 26/84 (30%), Positives = 39/84 (46%), Gaps = 6/84 (7%)
 Frame = +3

Query: 267 ASPLVQIIVNVNQA-LTPSPVEIN--PEPVI--VDEESEIKPDPVIVVDGPEVTPVIIAD 431
           A P+V   ++V Q  + P   E+   P+P +  V  E+   P P +    PEV P +   
Sbjct: 564 AVPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVPQPPVAPVAPEV-PSVPQR 622

Query: 432 PAI-VLPEPVIVAPIEPTPVSPVI 500
           PA+ V+PE   V      PV P +
Sbjct: 623 PAVPVVPEAPSVPQPPAAPVVPEV 646



 Score = 25.0 bits (52), Expect = 6.6
 Identities = 24/80 (30%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +3

Query: 267 ASPLVQIIVNVNQALTPSPVEINPEPVIVDEESEIKPDPVIV-VDGPEVTPVIIADPAIV 443
           A+P+V    +V Q   P+ V + PE + V +       P +  V  P V PV+   P++ 
Sbjct: 549 AAPVVPEAPSVPQR--PA-VPVVPEALSVPQPPVAPVAPEVPSVPQPPVAPVVPEAPSVP 605

Query: 444 LPEPVIVAPIEPT-PVSPVI 500
            P    VAP  P+ P  P +
Sbjct: 606 QPPVAPVAPEVPSVPQRPAV 625



 Score = 24.6 bits (51), Expect = 8.7
 Identities = 21/73 (28%), Positives = 31/73 (42%), Gaps = 8/73 (10%)
 Frame = +3

Query: 306 ALTPSPV--EINPEPVIVDEESEIKPDPVIV--VDGPEVTPVIIADPAIVLPEPVIVAPI 473
           +L P P   ++ PE  I     +     VI   V  P   PV+   P++  P    VAP 
Sbjct: 481 SLNPPPAMPKVFPERDISSASQKAAQPSVITPSVPQPPAAPVVPEAPSVHQPPAAPVAPE 540

Query: 474 EPT----PVSPVI 500
            P+    P +PV+
Sbjct: 541 VPSAPQRPAAPVV 553


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.4 bits (53), Expect = 5.0
 Identities = 10/26 (38%), Positives = 14/26 (53%)
 Frame = +2

Query: 167 NHQRIRANRQRTRYRRLPRSSFPSRH 244
           NH+R        ++ + P SS PSRH
Sbjct: 594 NHERSPNGNNNLKFSKDPNSSSPSRH 619


>SPAC27F1.09c |prp10|sap155|U2 snRNP-associated protein
           Sap155|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -3

Query: 285 SELGEKPGRGRWDQ 244
           +E+ +KP R RWDQ
Sbjct: 208 TEISQKPKRSRWDQ 221


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 6.6
 Identities = 11/27 (40%), Positives = 16/27 (59%)
 Frame = +3

Query: 300 NQALTPSPVEINPEPVIVDEESEIKPD 380
           +Q+L  +  E+N E    D ESE+ PD
Sbjct: 219 SQSLVGNNCEVNSEDEFSDLESEVDPD 245


>SPBC1604.14c |shk1|pak1, orb2|PAK-related kinase
           Shk1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 658

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 13/39 (33%), Positives = 19/39 (48%)
 Frame = +3

Query: 264 QASPLVQIIVNVNQALTPSPVEINPEPVIVDEESEIKPD 380
           Q SPLV      N   + SPV + P+ +   E   I+P+
Sbjct: 285 QPSPLVSSKSTDNIIRSHSPVLLTPQTLSTSETKHIRPN 323


>SPAC3C7.11c |cnx1|cal1, cal1|calnexin |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 560

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 20/49 (40%), Positives = 24/49 (48%), Gaps = 5/49 (10%)
 Frame = +3

Query: 321 PVEI-NPEPVI----VDEESEIKPDPVIVVDGPEVTPVIIADPAIVLPE 452
           PVEI +PE +     VDE     P+ V   D  E  P +I DP  V PE
Sbjct: 239 PVEIYDPEDIKPADWVDEPEIPDPNAVKPDDWDEDAPRMIPDPDAVKPE 287


>SPCC13B11.04c ||SPCC777.01c|glutathione-dependent formaldehyde
           dehydrogenase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 380

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +3

Query: 399 GPEVTPVIIADPAIVLPEP 455
           GP+VT V + DP I L  P
Sbjct: 82  GPQVTTVQVGDPVIALYTP 100


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,688,429
Number of Sequences: 5004
Number of extensions: 32838
Number of successful extensions: 124
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)