Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28n09
         (531 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    23   1.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    23   1.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    23   1.5  
AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase...    23   2.6  
M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee homeobox-...    21   7.9  
DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    21   7.9  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   7.9  

>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 52  QEVDDD*LKNWCPLLF*ESVHLISLKYYGSK 144
           QEV    LKN    LF  + + +++K +GSK
Sbjct: 33  QEVKQSFLKNQLQALFQPTDNKLAMKLFGSK 63



 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 270 LHRISSISSFWSRLLTA*LSFSLIVSSLCLAGFEDD 163
           +H  SS   +W   +   L  +LI+  + ++ F DD
Sbjct: 81  IHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDD 116


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 52  QEVDDD*LKNWCPLLF*ESVHLISLKYYGSK 144
           QEV    LKN    LF  + + +++K +GSK
Sbjct: 33  QEVKQSFLKNQLQALFQPTDNKLAMKLFGSK 63



 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 270 LHRISSISSFWSRLLTA*LSFSLIVSSLCLAGFEDD 163
           +H  SS   +W   +   L  +LI+  + ++ F DD
Sbjct: 81  IHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDD 116


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 23.4 bits (48), Expect = 1.5
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +1

Query: 52  QEVDDD*LKNWCPLLF*ESVHLISLKYYGSK 144
           QEV    LKN    LF  + + +++K +GSK
Sbjct: 33  QEVKQSFLKNQLQALFQPTDNKLAMKLFGSK 63



 Score = 23.0 bits (47), Expect = 1.9
 Identities = 10/36 (27%), Positives = 18/36 (50%)
 Frame = -1

Query: 270 LHRISSISSFWSRLLTA*LSFSLIVSSLCLAGFEDD 163
           +H  SS   +W   +   L  +LI+  + ++ F DD
Sbjct: 81  IHPCSSFRFYWDLCMLLLLVANLIILPVAISFFNDD 116


>AB204558-1|BAD89803.1| 1143|Apis mellifera nitric oxide synthase
           protein.
          Length = 1143

 Score = 22.6 bits (46), Expect = 2.6
 Identities = 8/18 (44%), Positives = 13/18 (72%)
 Frame = +2

Query: 383 EFPNSYPYAPPVVKFMTP 436
           EFP+  P+AP ++  +TP
Sbjct: 876 EFPSVRPFAPLLLLHLTP 893


>M29491-1|AAA27726.1|   79|Apis mellifera protein ( Bee
           homeobox-containing gene,partial cds, clone H17. ).
          Length = 79

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/36 (33%), Positives = 21/36 (58%)
 Frame = +2

Query: 164 SSSNPAKQSEDTIKLKDNHAVSKRLQKELMELMRCS 271
           SSS    +++  I  ++  A +KRLQ+  +E +R S
Sbjct: 43  SSSLHLTETQVKIWFQNRRAKAKRLQEAEIEKLRLS 78


>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 11/37 (29%), Positives = 16/37 (43%)
 Frame = +2

Query: 353 YAGHKYKLSLEFPNSYPYAPPVVKFMTPCFHPNVDTC 463
           Y   K  L +  P+ +     V    T CF P++D C
Sbjct: 147 YVAAKLALGVRLPDIHN---SVTGKTTACFEPSLDYC 180


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 7.9
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +3

Query: 279  EYQHSLKVKTSSNGSGPSMDL*KLYTQATN 368
            EY + L+VK   NG  PS+      T A N
Sbjct: 970  EY-YELEVKDQKNGKPPSVVSRSTQTSANN 998


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 146,189
Number of Sequences: 438
Number of extensions: 3164
Number of successful extensions: 11
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14968302
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)