Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28n07
         (639 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces po...    30   0.32 
SPBC409.09c |mis13|cnl1|kinetochore protein Mis13|Schizosaccharo...    27   2.3  
SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces ...    27   2.3  
SPBC16H5.10c |prp43||ATP-dependent RNA helicase Prp43|Schizosacc...    27   3.0  
SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate syntha...    26   4.0  
SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyce...    26   5.3  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    25   7.0  

>SPBC16G5.12c |top3||DNA topoisomerase III|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 622

 Score = 29.9 bits (64), Expect = 0.32
 Identities = 10/35 (28%), Positives = 23/35 (65%)
 Frame = +1

Query: 490 EYSQNPQFKAHVINLMTSLNLAVNNLNQPEIVAAM 594
           EY  + +F+ H++++M S   + + + +PE++A M
Sbjct: 465 EYRLHEEFQPHILDMMDSSTSSPSYITEPELIALM 499


>SPBC409.09c |mis13|cnl1|kinetochore protein
           Mis13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 329

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 24/123 (19%), Positives = 50/123 (40%), Gaps = 17/123 (13%)
 Frame = +1

Query: 253 EITNQIMGTWFSYMWWGGDPDVVNP-------------VSGLTRR--EIHAVQKSWAPVN 387
           E+ N+++    S  W+   PD V P             V  L+ +  ++H  + +W  V 
Sbjct: 147 EVLNELLANKVSVSWYQRPPDAVIPNKPHPQNLKNAQLVDELSAKLTQLHNEEAAWRAVA 206

Query: 388 ANSFATGSELL--RRLFNTYPDTKEYFKMVRKLPEEEYSQNPQFKAHVINLMTSLNLAVN 561
           ANS ++   +L  ++   +    ++  K    LP ++  + P          T L++   
Sbjct: 207 ANSVSSDKSILSFKKAVESIDSKQDLDKQDSPLPPDDAPELPNISKLKPKFHTLLDMLAE 266

Query: 562 NLN 570
           N++
Sbjct: 267 NIH 269


>SPBC56F2.04 |utp20||U3 snoRNP protein Utp20|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2493

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/41 (36%), Positives = 23/41 (56%)
 Frame = +3

Query: 3   VPPHGSTAPRVSTHNTKVIVFILSVKYARENLSLTTNLIVE 125
           V P+  + P++  H   +  F L V+YARE  SL+   I+E
Sbjct: 70  VTPYSQSLPQIVYHQKTI--FDLIVQYAREGDSLSLQPILE 108


>SPBC16H5.10c |prp43||ATP-dependent RNA helicase
           Prp43|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 735

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 24/74 (32%), Positives = 33/74 (44%), Gaps = 3/74 (4%)
 Frame = +1

Query: 301 GGDPDVVNPVSGLTRREIHAVQKSWAPVNANSFATGSELLRRLFNTYPDTKEYFKMV--- 471
           G D + V    GLTRR     Q + A    N+F          FN  P ++ YFK++   
Sbjct: 23  GDDSEEVVSSKGLTRRATTVAQAAKAEEGPNNF----------FNDKPFSQNYFKILETR 72

Query: 472 RKLPEEEYSQNPQF 513
           R+LP   Y Q  +F
Sbjct: 73  RELP--VYQQREEF 84


>SPBC418.01c |his4|SPBC887.20c|imidazoleglycerol-phosphate
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 541

 Score = 26.2 bits (55), Expect = 4.0
 Identities = 14/42 (33%), Positives = 19/42 (45%)
 Frame = +1

Query: 391 NSFATGSELLRRLFNTYPDTKEYFKMVRKLPEEEYSQNPQFK 516
           NS A  S+  +  F   P  K YF     +PE+     P+FK
Sbjct: 122 NSCAVRSDTSKEFFGMRPHDKFYFVHSYMIPEKGLILPPEFK 163


>SPAC56F8.16 |esc1||transcription factor Esc1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 413

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/45 (28%), Positives = 24/45 (53%)
 Frame = +1

Query: 352 IHAVQKSWAPVNANSFATGSELLRRLFNTYPDTKEYFKMVRKLPE 486
           ++   +S++ +NAN     +E LRR+ +  P+  EY     + PE
Sbjct: 290 VYRAPESFSSINANVPYGRNEYLRRVTSLVPNQPEYTGPYTRNPE 334


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/41 (29%), Positives = 20/41 (48%)
 Frame = +1

Query: 250 TEITNQIMGTWFSYMWWGGDPDVVNPVSGLTRREIHAVQKS 372
           T + N  MG++   ++W GDP   + +  L   E H +  S
Sbjct: 500 TVVPNHHMGSYAIQIFWRGDPQHESFILKLRNEESHKLWMS 540


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,547,234
Number of Sequences: 5004
Number of extensions: 51337
Number of successful extensions: 141
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 139
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)