Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28n07
         (639 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0307 - 2194796-2199274                                           30   1.8  
06_03_0159 - 17358853-17360781                                         29   4.1  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           27   9.5  
02_02_0151 - 7220335-7220819,7220933-7223507                           27   9.5  

>07_01_0307 - 2194796-2199274
          Length = 1492

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 14/36 (38%), Positives = 21/36 (58%)
 Frame = +2

Query: 14  RIDRAARLHTQYQSNCIYFISKIRARKLVFNYKSHR 121
           RID   ++HT+ ++     +SK R RKL  N+K  R
Sbjct: 803 RIDNLEKVHTKEEAAEAKLLSKTRLRKLELNWKQGR 838


>06_03_0159 - 17358853-17360781
          Length = 642

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 6/43 (13%)
 Frame = -1

Query: 390 GVDGGP*FLNCVYLSPREPGDRVHH------VRIPTPPHVAKP 280
           G  GGP     ++L+P  P    HH      +R P PPH+  P
Sbjct: 107 GGGGGPLLALRLFLAPLHPAAVTHHSFNSALLRFPLPPHLLPP 149


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/24 (45%), Positives = 11/24 (45%)
 Frame = -1

Query: 345 PREPGDRVHHVRIPTPPHVAKPGA 274
           P  P    HH   P PPH   PGA
Sbjct: 289 PLPPSHHHHHGHHPPPPHPLPPGA 312


>02_02_0151 - 7220335-7220819,7220933-7223507
          Length = 1019

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = -3

Query: 244 SVVLPATRSGKTVFTSQINVFTNKLPCDT*DFEYISEL 131
           S  LP+T  G   FT++ N F+ +LP D      ++EL
Sbjct: 459 SGALPSTAVGLKSFTAENNQFSGELPADMSRLANLTEL 496


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,273,912
Number of Sequences: 37544
Number of extensions: 350101
Number of successful extensions: 909
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 908
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)