Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28n07
         (639 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.           75   8e-16
AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.           75   8e-16
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   2.5  
DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.           22   4.4  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   4.4  
AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly pro...    21   7.6  

>AM158085-1|CAJ43389.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 74.5 bits (175), Expect = 8e-16
 Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
 Frame = +1

Query: 271 MGTWFSYMWWGG-DPDVVNPVSGLTRREIHAVQKSWAPVNANSFATGSELLRRLFNTYPD 447
           MGT+  ++     D + ++  +GLT R+   VQ +WA V  +  A+G  ++   F  YP+
Sbjct: 1   MGTFLRFLGISSSDDNRIDQATGLTERQKKLVQNTWAVVRKDEVASGIAVMTAFFKKYPE 60

Query: 448 TKEYFKMVRKLPEEEYSQNPQFKAHVINLMTSLNLAVNNLNQPEIVAAMMTKLGESHRRR 627
            + YF      P  E   N +F+AH   ++T+LN  ++ L+ P ++ A +  L E H++R
Sbjct: 61  YQRYFTAFMDTPLNELPANKRFQAHCAGVITALNNVIDFLHDPGLMEASLIGLVERHKKR 120

Query: 628 -QIKE 639
            Q KE
Sbjct: 121 GQTKE 125


>AM158084-1|CAJ43388.1|  171|Apis mellifera globin 1 protein.
          Length = 171

 Score = 74.5 bits (175), Expect = 8e-16
 Identities = 39/125 (31%), Positives = 67/125 (53%), Gaps = 2/125 (1%)
 Frame = +1

Query: 271 MGTWFSYMWWGG-DPDVVNPVSGLTRREIHAVQKSWAPVNANSFATGSELLRRLFNTYPD 447
           MGT+  ++     D + ++  +GLT R+   VQ +WA V  +  A+G  ++   F  YP+
Sbjct: 1   MGTFLRFLGISSSDDNRIDQATGLTERQKKLVQNTWAVVRKDEVASGIAVMTAFFKKYPE 60

Query: 448 TKEYFKMVRKLPEEEYSQNPQFKAHVINLMTSLNLAVNNLNQPEIVAAMMTKLGESHRRR 627
            + YF      P  E   N +F+AH   ++T+LN  ++ L+ P ++ A +  L E H++R
Sbjct: 61  YQRYFTAFMDTPLNELPANKRFQAHCAGVITALNNVIDFLHDPGLMEASLIGLVERHKKR 120

Query: 628 -QIKE 639
            Q KE
Sbjct: 121 GQTKE 125


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.0 bits (47), Expect = 2.5
 Identities = 13/38 (34%), Positives = 18/38 (47%)
 Frame = -1

Query: 414 FTAGCKRVGVDGGP*FLNCVYLSPREPGDRVHHVRIPT 301
           +TA C +V   G    L  V++  R  G  + H  IPT
Sbjct: 218 YTADCTQVYSTGNFTCLEVVFVLKRRLGYYLFHTYIPT 255


>DQ257416-1|ABB81847.1|  552|Apis mellifera yellow-h protein.
          Length = 552

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/24 (33%), Positives = 13/24 (54%)
 Frame = +1

Query: 391 NSFATGSELLRRLFNTYPDTKEYF 462
           N   T  E    L+ + PD+++YF
Sbjct: 78  NKLPTTPEYNNHLYGSTPDSRDYF 101


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 9/17 (52%), Positives = 11/17 (64%)
 Frame = -2

Query: 569 FRLLTAKFNDVIKLMTC 519
           FR+L A  ND+IK   C
Sbjct: 397 FRILIANVNDLIKNTRC 413


>AY313893-1|AAQ82184.1|  437|Apis mellifera major royal jelly
           protein MRJP6 protein.
          Length = 437

 Score = 21.4 bits (43), Expect = 7.6
 Identities = 9/18 (50%), Positives = 12/18 (66%)
 Frame = -2

Query: 569 FRLLTAKFNDVIKLMTCA 516
           FR+L A  N++IK   CA
Sbjct: 401 FRILGANVNNLIKNTRCA 418


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,086
Number of Sequences: 438
Number of extensions: 3647
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19193721
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)