Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28n06
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1235.12c |mug146||meiotically upregulated gene Mug46|Schizos...    34   0.016
SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyc...    28   1.4  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        27   3.3  
SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24 |Schiz...    25   9.9  

>SPCC1235.12c |mug146||meiotically upregulated gene
           Mug46|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 311

 Score = 34.3 bits (75), Expect = 0.016
 Identities = 24/60 (40%), Positives = 32/60 (53%), Gaps = 1/60 (1%)
 Frame = -3

Query: 265 SAKPST-LFNNANKNSLWKCTWSLLNSFLASPSNSSLVSFIRNHNFI*LKYFVDFSPSTS 89
           SA PS   F+N N N L +    L + FL+S  NSS V   R H F  L +++ FS  +S
Sbjct: 28  SATPSLEFFSNENTNRLSEVQCKLTH-FLSSSENSSSVRNTRTHKFKQLLHYIFFSNRSS 86


>SPBC15C4.05 |||ATP-dependent RNA/DNA helicase |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1428

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 21/85 (24%), Positives = 41/85 (48%), Gaps = 1/85 (1%)
 Frame = +3

Query: 24   SEIKNK-QKMASDTLNIARRKLNEVLGEKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSN 200
            SE+ N   K  + T  ++  + +E + E +     Q+ +   +K+      G+A+  L N
Sbjct: 1308 SELPNMPSKFVAYTNMMSSTRASEYVNETTMVTLRQLLMMCGLKVENRVSVGQAK--LDN 1365

Query: 201  DQVHFHNEFLLALLNKVEGLAETSI 275
              V+F N ++ A L+ +    ETS+
Sbjct: 1366 FTVYFENVYVSASLSILRRFIETSL 1390


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 23/85 (27%), Positives = 42/85 (49%)
 Frame = +3

Query: 18   KVSEIKNKQKMASDTLNIARRKLNEVLGEKSTKYFNQMKLWFRMKLTKEEFDGEARKLLS 197
            KVS I+++QK  +D +   R+K  E L E S  + + + L     +++ + D      L+
Sbjct: 3709 KVSSIRDQQKGINDLIEYCRKKRTE-LPELSYCFKHLVSLQSLKSISRTQVD------LT 3761

Query: 198  NDQVHFHNEFLLALLNKVEGLAETS 272
            ND+      F+L L + +    ET+
Sbjct: 3762 NDEFLNLMNFVLNLFDSLLSSIETA 3786


>SPCC24B10.17 |emp24||COPII-coated vesicle component Emp24
          |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 199

 Score = 25.0 bits (52), Expect = 9.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = -3

Query: 73 AIFNVSEAIFCLFLISLTF 17
          A FNV +A+ C + IS+ F
Sbjct: 2  AFFNVFKAVLCAYFISVVF 20


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,445,261
Number of Sequences: 5004
Number of extensions: 44290
Number of successful extensions: 117
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 117
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)