Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28n06
(672 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_02_0893 + 24077634-24078379,24079347-24080412,24080741-240808... 39 0.004
02_01_0231 - 1537788-1537804,1537963-1538173 34 0.090
04_04_1437 + 33600282-33601562 34 0.12
03_06_0058 - 31330067-31330978 32 0.36
04_03_0178 + 12298502-12298878,12298896-12298998,12299211-122992... 31 0.63
05_06_0143 + 25970745-25970962,25971053-25971140,25971588-259717... 30 1.5
04_03_0372 + 15068405-15070000 29 3.4
01_07_0188 - 41866689-41866763,41866889-41867155,41867277-418677... 29 3.4
>12_02_0893 +
24077634-24078379,24079347-24080412,24080741-24080866,
24081278-24081384,24081720-24081744
Length = 689
Score = 38.7 bits (86), Expect = 0.004
Identities = 18/63 (28%), Positives = 34/63 (53%)
Frame = +3
Query: 57 DTLNIARRKLNEVLGEKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLA 236
DT+ I + ++ E+S YF+ +K + +L KEEFD + D + +HN + +
Sbjct: 289 DTMEIKSQIAKKLGAERSEHYFHSLKKFLGGQLGKEEFDKICVATMGRDNIKYHNFLIRS 348
Query: 237 LLN 245
+L+
Sbjct: 349 ILS 351
>02_01_0231 - 1537788-1537804,1537963-1538173
Length = 75
Score = 34.3 bits (75), Expect = 0.090
Identities = 12/47 (25%), Positives = 26/47 (55%)
Frame = +3
Query: 102 EKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALL 242
E+S +YF +K++ ++ K FD + + + + HN L+++L
Sbjct: 14 ERSERYFRYLKMFLGSRMEKSMFDRVVIQTIGRENIRLHNHLLMSVL 60
>04_04_1437 + 33600282-33601562
Length = 426
Score = 33.9 bits (74), Expect = 0.12
Identities = 16/61 (26%), Positives = 35/61 (57%), Gaps = 1/61 (1%)
Frame = +3
Query: 63 LNIARRKLNEVLG-EKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLAL 239
L + +L + LG ++S +YF+ +K + +L+K +FD + L + + HN+ + ++
Sbjct: 37 LREVKLQLEKRLGPDRSRRYFSYLKGYLSNRLSKADFDKVCLQTLGRENLRVHNQLIRSV 96
Query: 240 L 242
L
Sbjct: 97 L 97
>03_06_0058 - 31330067-31330978
Length = 303
Score = 32.3 bits (70), Expect = 0.36
Identities = 19/79 (24%), Positives = 40/79 (50%), Gaps = 2/79 (2%)
Frame = +3
Query: 42 QKMASDTLNIARRKLNEVLG-EKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFH 218
+K+A + +++L + LG +++ +YF + +KLTK EFD + + + H
Sbjct: 5 RKLARVDIAELKQRLVKRLGRQRAGQYFAHLTRLLNLKLTKVEFDKLCYATIGRENIALH 64
Query: 219 NEFLLALL-NKVEGLAETS 272
N + ++ N + G+ S
Sbjct: 65 NALIRGIISNALSGVPPPS 83
>04_03_0178 +
12298502-12298878,12298896-12298998,12299211-12299271,
12299423-12299486,12299825-12299996,12300765-12300863
Length = 291
Score = 31.5 bits (68), Expect = 0.63
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = +3
Query: 105 KSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHFHNEFLLALLN 245
++ KYF ++ + KL K EFD L + + HN + ++L+
Sbjct: 46 RAKKYFQHLERFLSSKLNKNEFDKLCLVTLGRENLPLHNHLIRSILH 92
>05_06_0143 +
25970745-25970962,25971053-25971140,25971588-25971732,
25972014-25972101,25972179-25972381,25972774-25972913
Length = 293
Score = 30.3 bits (65), Expect = 1.5
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = -3
Query: 235 ANKNSLWKCTWSLLNSFLASPSNSS-LVSFIRNHNFI*LKYFVDFSPSTSFNFRRAIFNV 59
AN N LW+ +SL NS+ ++N ++ SP FN++ A
Sbjct: 186 ANDNHLWEMNYSLFFGICHINCNSTPTAGNVQNTDYHVQNSIYQVSPDPGFNWKEAFHKK 245
Query: 58 SEAIFCLFL 32
A+F FL
Sbjct: 246 YAALFYTFL 254
>04_03_0372 + 15068405-15070000
Length = 531
Score = 29.1 bits (62), Expect = 3.4
Identities = 12/32 (37%), Positives = 19/32 (59%)
Frame = +3
Query: 366 PVDILEYLPPNSPPGAGSDGVKYATQEIFLPD 461
P + ++ LPP PP G G K+ + +FLP+
Sbjct: 164 PRESVQLLPPLPPPPGGGAG-KHVVERVFLPE 194
>01_07_0188 -
41866689-41866763,41866889-41867155,41867277-41867722,
41867945-41868033,41868279-41868368,41868661-41868739,
41868979-41869042,41869597-41869684,41869776-41869836,
41869906-41869969,41870134-41870188,41870275-41870346,
41870469-41870551,41870629-41870724,41871279-41871383,
41872159-41872227,41872470-41872561,41872667-41872886
Length = 704
Score = 29.1 bits (62), Expect = 3.4
Identities = 15/48 (31%), Positives = 19/48 (39%)
Frame = -3
Query: 292 FSWAIVIEVSAKPSTLFNNANKNSLWKCTWSLLNSFLASPSNSSLVSF 149
F W + E P NNA+ NS+W W + L S N F
Sbjct: 378 FHWLVGHET---PQIEINNAHDNSVWDLAWHPVGYLLCSGGNDHATRF 422
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,210,319
Number of Sequences: 37544
Number of extensions: 268000
Number of successful extensions: 735
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 734
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1703141568
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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