Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28n06
         (672 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U37429-9|AAA79344.3|  796|Caenorhabditis elegans Hypothetical pr...    34   0.080
U88169-10|AAB42232.2|  231|Caenorhabditis elegans Coenzyme q (ub...    28   6.9  
AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine re...    28   6.9  

>U37429-9|AAA79344.3|  796|Caenorhabditis elegans Hypothetical
           protein F09E5.5 protein.
          Length = 796

 Score = 34.3 bits (75), Expect = 0.080
 Identities = 22/85 (25%), Positives = 40/85 (47%)
 Frame = +3

Query: 36  NKQKMASDTLNIARRKLNEVLGEKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQVHF 215
           N Q +  D+  ++R  LN++  +      + +KLW +  ++ E  D       S D    
Sbjct: 368 NAQAILQDSPVLSRSTLNQLCDQFVEMSRDDLKLWLKNTVSHETHDWYKNLRPSEDN--- 424

Query: 216 HNEFLLALLNKVEGLAETSITIAQE 290
           H  F   L N V G+ + ++T+A+E
Sbjct: 425 HGYFYTDLPNTVFGMLKDTVTLAKE 449


>U88169-10|AAB42232.2|  231|Caenorhabditis elegans Coenzyme q
           (ubiquinone) biosynthesisprotein 4 protein.
          Length = 231

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = +3

Query: 30  IKNKQKMASDTLNIARRKLNEVLGEKSTKYFNQMKLWFRMKLTKEEFDGEARKLLSNDQ 206
           +  + +   D  +IA  +   +LGE + KYF  ++    M +T   F G AR L  N Q
Sbjct: 125 VMQRYRETHDFTHIALEQKTNMLGEVTVKYFEGIQYGLPMCVTGGIFGG-ARLLTKNRQ 182


>AF068717-3|AAC17762.2|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein142 protein.
          Length = 361

 Score = 27.9 bits (59), Expect = 6.9
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -1

Query: 195 LIVSLLLRRILP*SVSYGTTISFD*NTLLT--FHRVLHLIFAVLYLMYRKPFFVC 37
           L+ S+      P  ++ G +  FD N  +T  FH ++ L   +L L     FF+C
Sbjct: 275 LLTSMFFIAQFPIGIANGVSYFFDKNPGITKIFHEIMFLFSIMLVLNTISHFFIC 329


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,518,064
Number of Sequences: 27780
Number of extensions: 244033
Number of successful extensions: 726
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 717
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1518563232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)