Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28n04
         (515 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   0.81 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.5  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   7.5  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   7.5  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   7.5  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   7.5  
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    21   10.0 
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    21   10.0 
AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.          21   10.0 
AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.          21   10.0 
AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex det...    21   10.0 

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 24.2 bits (50), Expect = 0.81
 Identities = 10/29 (34%), Positives = 15/29 (51%)
 Frame = -1

Query: 473 SSARPSQLISAPAHNNTMPYLYGLCDCLP 387
           S  R S+ ++A AH+   P     CD +P
Sbjct: 55  SGTRSSESLTAQAHHRLYPAFSSSCDPVP 83


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.5
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +2

Query: 38  SFLRLRKRNSLTICSRDVAALP 103
           SFL LR+ ++L I   +V ALP
Sbjct: 142 SFLGLRELHTLEIVESNVQALP 163


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 405 AIQVWHGVVMC 437
           A+ VW GV MC
Sbjct: 362 AMNVWDGVCMC 372


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 405 AIQVWHGVVMC 437
           A+ VW GV MC
Sbjct: 331 AMNVWDGVCMC 341


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 405 AIQVWHGVVMC 437
           A+ VW GV MC
Sbjct: 382 AMNVWDGVCMC 392


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +3

Query: 405 AIQVWHGVVMC 437
           A+ VW GV MC
Sbjct: 331 AMNVWDGVCMC 341


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 399 TKAIQVWHGVVM 434
           TKAI +W GV +
Sbjct: 301 TKAIDIWTGVCL 312


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 7/12 (58%), Positives = 9/12 (75%)
 Frame = +3

Query: 399 TKAIQVWHGVVM 434
           TKAI +W GV +
Sbjct: 301 TKAIDIWTGVCL 312


>AY569719-1|AAS86672.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 504 HAHISHRFRVVFSQTQPVD*RSRT 433
           H+H   RFR   S+      RSRT
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRT 31


>AY569718-1|AAS86671.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 504 HAHISHRFRVVFSQTQPVD*RSRT 433
           H+H   RFR   S+      RSRT
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRT 31


>AY569715-1|AAS86668.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 504 HAHISHRFRVVFSQTQPVD*RSRT 433
           H+H   RFR   S+      RSRT
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRT 31


>AY569714-1|AAS86667.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 504 HAHISHRFRVVFSQTQPVD*RSRT 433
           H+H   RFR   S+      RSRT
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRT 31


>AY569713-1|AAS86666.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 504 HAHISHRFRVVFSQTQPVD*RSRT 433
           H+H   RFR   S+      RSRT
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRT 31


>AY569711-1|AAS86664.1|  401|Apis mellifera feminizer protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 504 HAHISHRFRVVFSQTQPVD*RSRT 433
           H+H   RFR   S+      RSRT
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRT 31


>AY569702-1|AAS86655.1|  400|Apis mellifera feminizer protein.
          Length = 400

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 504 HAHISHRFRVVFSQTQPVD*RSRT 433
           H+H   RFR   S+      RSRT
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRT 31


>AY350616-1|AAQ57658.1|  401|Apis mellifera complementary sex
           determiner protein.
          Length = 401

 Score = 20.6 bits (41), Expect = 10.0
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -3

Query: 504 HAHISHRFRVVFSQTQPVD*RSRT 433
           H+H   RFR   S+      RSRT
Sbjct: 8   HSHHDERFRQSRSEDSETGLRSRT 31


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 131,588
Number of Sequences: 438
Number of extensions: 2430
Number of successful extensions: 16
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14354847
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)