Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmmt28n01
(569 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyce... 54 1e-08
SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomy... 30 0.27
SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr... 29 0.48
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 29 0.63
SPBC409.08 |||spermine family transporter |Schizosaccharomyces p... 27 1.9
SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr 2|||... 27 2.6
SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces p... 26 4.5
SPAC1071.11 |||NADH-dependent flavin oxidoreductase |Schizosacch... 25 7.8
SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces po... 25 7.8
SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyc... 25 7.8
SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b |Sc... 25 7.8
>SPCC417.12 |||carboxylesterase-lipase family |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 520
Score = 54.0 bits (124), Expect = 1e-08
Identities = 42/149 (28%), Positives = 69/149 (46%), Gaps = 17/149 (11%)
Frame = +1
Query: 124 GLIQGSWKVSTKGRPYAS-FQGVPYARPPIGKYRFREPQQLK---PWTGVWDATRTLSSC 291
G++ G + G+ F G+ YA+PP+GK R+R P L+ ++G ++ +T+
Sbjct: 2 GVLHGLTVLDENGKEKCHRFTGIRYAKPPVGKLRWRRPVTLEDGYDYSGDYNQFKTICPQ 61
Query: 292 LQYDPFVGTITG-----SENCLFVNVYTPK-LTPTASLPVMVFIHGGAFMYGEGGFY--- 444
Y+ + E+CLF+N++ P P PV+ FIHGG G Y
Sbjct: 62 PFYNNRKNQVRNPDFKYDEDCLFLNIWVPAGEKPAEGWPVLYFIHGGWLQVGNPLHYRQC 121
Query: 445 DAGNLM----DRDMVVVTLNYRLGPLGFL 519
D +L ++V+ +RL GFL
Sbjct: 122 DPQDLQADGSPAKFILVSPGHRLNLFGFL 150
>SPAC3H1.09c |||vacuolar amino acid transporter |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 656
Score = 29.9 bits (64), Expect = 0.27
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = -3
Query: 492 IQRDDHHIPVHQISGIVKSPFTVHEGPAMDENHNRKRGRWSQLGCVHIHEQTILTTSYSS 313
I + ++P + +P V+ G DENHN ++G+ L H + + +TS
Sbjct: 50 ISPSESNLPNNVAENTTDTP--VNYGSIRDENHNSRKGKDVTLNSDEAHSENVPSTSEDP 107
Query: 312 D 310
D
Sbjct: 108 D 108
>SPAC4G8.03c |||RNA-binding protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 780
Score = 29.1 bits (62), Expect = 0.48
Identities = 15/49 (30%), Positives = 28/49 (57%), Gaps = 6/49 (12%)
Frame = -3
Query: 507 RSQSIIQRDDHHIPVHQ------ISGIVKSPFTVHEGPAMDENHNRKRG 379
RS++++Q D+HH + +S ++ TV E P +D+N +K+G
Sbjct: 349 RSENVLQNDNHHSSLSMDNDPTNVSTKNRNNQTVGEHPYVDDNKKKKKG 397
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 28.7 bits (61), Expect = 0.63
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +1
Query: 241 LKPWTGVWDATRTLSSCLQYDPFVGTITGSE 333
LK W+ +W+ R L ++Y +V T+ GSE
Sbjct: 108 LKIWSKLWEDNRRLKKIIKYTSYV-TVKGSE 137
>SPBC409.08 |||spermine family transporter |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 539
Score = 27.1 bits (57), Expect = 1.9
Identities = 13/40 (32%), Positives = 20/40 (50%)
Frame = +1
Query: 94 GFNPVVRVSQGLIQGSWKVSTKGRPYASFQGVPYARPPIG 213
G P+ ++ G+I W+ +G A F PYA P +G
Sbjct: 204 GCTPLT-LAGGVISDVWETRERGLAIAFFAAGPYAGPTLG 242
>SPBC4.06 |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 462
Score = 26.6 bits (56), Expect = 2.6
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = -1
Query: 425 YMKAPPWMKTITGREAVGVSLGVYTFTNRQFSLPVIVPTNGS 300
YM+A P ++ + E V G+Y + R+ LPVI N S
Sbjct: 145 YMRATPMVRALESLEHV--FSGLYPESKRKMGLPVIFTRNWS 184
>SPCC11E10.08 |rik1||silencing protein Rik1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1040
Score = 25.8 bits (54), Expect = 4.5
Identities = 17/61 (27%), Positives = 26/61 (42%)
Frame = -3
Query: 351 IHEQTILTTSYSSDEWIVL*TRGKSPRGIPNSSPRLQLLGFPKSILSNWWPCVGNSLKAS 172
IHE + S +S+ ++ + K IPN P LL I ++ C G AS
Sbjct: 311 IHEGLLFIGSKNSESKLINLSTLKDVDSIPNLGPIHDLLVLKNDIEKSFLVCAGTPRNAS 370
Query: 171 V 169
+
Sbjct: 371 L 371
>SPAC1071.11 |||NADH-dependent flavin oxidoreductase
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 244
Score = 25.0 bits (52), Expect = 7.8
Identities = 11/39 (28%), Positives = 21/39 (53%)
Frame = -1
Query: 368 SLGVYTFTNRQFSLPVIVPTNGSYCRHEERVLVASQTPV 252
++ + R+F+ PV++ T+G H + +S TPV
Sbjct: 38 NVNAFRLLMRRFAQPVVIITSGFADGHRAGMTASSFTPV 76
>SPAC323.01c |||mitochondrial NADH kinase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 361
Score = 25.0 bits (52), Expect = 7.8
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +1
Query: 427 GEGGFYDAGNLMDRDMVVVTLNYRLGPLGFLXTGD 531
G+G A +L R + L++ LG LGFL D
Sbjct: 133 GDGTILHAASLFARSGMPPILSFSLGTLGFLLPFD 167
>SPCC962.06c |bpb1|sf1|zinc finger protein Bpb1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 587
Score = 25.0 bits (52), Expect = 7.8
Identities = 18/64 (28%), Positives = 23/64 (35%)
Frame = -1
Query: 545 PGATSSPVXRKPRGPNL*FNVTTTISLSIRFPAS*NPPSPYMKAPPWMKTITGREAVGVS 366
PG P+ P PNL + + + P P P A P M I G A +
Sbjct: 501 PGVPLPPIPGAPGMPNLNMSQPPMVPPGMALPPGMPAPFPGYPAVPAMPGIPGATAPPGA 560
Query: 365 LGVY 354
G Y
Sbjct: 561 PGSY 564
>SPBC776.04 |sec2302|sec23-b|GTPase activating protein Sec23b
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 765
Score = 25.0 bits (52), Expect = 7.8
Identities = 13/48 (27%), Positives = 25/48 (52%)
Frame = +3
Query: 3 IQITGADARANEDAIKIIFPRCRGGYGDRSRFQPCSEGVPRAYTRQLE 146
++ TGA + D + I FP+C G + PC+ G+ + + +L+
Sbjct: 261 LRCTGAAVKIASDLLGIAFPKC-GSRIELFCGGPCTVGLGQVVSTELK 307
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,602,196
Number of Sequences: 5004
Number of extensions: 59043
Number of successful extensions: 149
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 145
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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