Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28n01
         (569 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...   168   4e-44
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.          168   4e-44
AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase ...    87   1e-19
AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase ...    87   1e-19
AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.           65   4e-13
AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.        54   8e-10
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    24   0.92 
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.6  
AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.                23   1.6  
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    23   1.6  
DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.              23   2.1  
AF388659-3|AAK71993.1|  548|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AF388659-2|AAK71994.1|  463|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.8  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   3.7  
DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.              21   6.5  
EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase p...    21   8.6  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    21   8.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    21   8.6  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score =  168 bits (408), Expect = 4e-44
 Identities = 85/180 (47%), Positives = 114/180 (63%), Gaps = 5/180 (2%)
 Frame = +1

Query: 43  LLKLYFLAAVVVTATAQGFNPVVRVSQGLIQGSWKVSTKGRPYASFQGVPYARPPIGKYR 222
           LL L  L+++V         P V+   G I+G +K+S  G+ Y +++G+PYA PP+GK+R
Sbjct: 3   LLFLVLLSSLVTFGWTLEDAPRVKTPLGAIKGYYKISGNGKQYEAYEGIPYALPPVGKFR 62

Query: 223 FREPQQLKPWTGVWDATRTLSSCLQYDPFV----GTITGSENCLFVNVYTPK-LTPTASL 387
           F+ PQ++  W G   AT+    CLQY          I G+E+CL++NVY P   TP+ SL
Sbjct: 63  FKAPQKIPAWIGELSATKFGFPCLQYTQLPVNPRDKIEGAEDCLYLNVYVPADRTPSQSL 122

Query: 388 PVMVFIHGGAFMYGEGGFYDAGNLMDRDMVVVTLNYRLGPLGFLXTGDEVAPGNNGLKDQ 567
           PV+ +IHGGAF +G G    A  LMD D++ VT+NYRLG LGFL T DEV PGN GLKDQ
Sbjct: 123 PVIFWIHGGAFQFGSGIPMGAKYLMDSDVIFVTINYRLGILGFLSTEDEVVPGNMGLKDQ 182


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score =  168 bits (408), Expect = 4e-44
 Identities = 85/180 (47%), Positives = 114/180 (63%), Gaps = 5/180 (2%)
 Frame = +1

Query: 43  LLKLYFLAAVVVTATAQGFNPVVRVSQGLIQGSWKVSTKGRPYASFQGVPYARPPIGKYR 222
           LL L  L+++V         P V+   G I+G +K+S  G+ Y +++G+PYA PP+GK+R
Sbjct: 3   LLFLVLLSSLVTFGWTLEDAPRVKTPLGAIKGYYKISGNGKQYEAYEGIPYALPPVGKFR 62

Query: 223 FREPQQLKPWTGVWDATRTLSSCLQYDPFV----GTITGSENCLFVNVYTPK-LTPTASL 387
           F+ PQ++  W G   AT+    CLQY          I G+E+CL++NVY P   TP+ SL
Sbjct: 63  FKAPQKIPAWIGELSATKFGFPCLQYTQLPVNPRDKIEGAEDCLYLNVYVPADRTPSQSL 122

Query: 388 PVMVFIHGGAFMYGEGGFYDAGNLMDRDMVVVTLNYRLGPLGFLXTGDEVAPGNNGLKDQ 567
           PV+ +IHGGAF +G G    A  LMD D++ VT+NYRLG LGFL T DEV PGN GLKDQ
Sbjct: 123 PVIFWIHGGAFQFGSGIPMGAKYLMDSDVIFVTINYRLGILGFLSTEDEVVPGNMGLKDQ 182


>AF213012-1|AAG43568.1|  492|Apis mellifera acetylcholinesterase
           protein.
          Length = 492

 Score = 87.0 bits (206), Expect = 1e-19
 Identities = 63/189 (33%), Positives = 99/189 (52%), Gaps = 35/189 (18%)
 Frame = +1

Query: 106 VVRVSQGLIQGSWKVSTKGRPYASFQGVPYARPPIGKYRFREPQQLKPWTGVWDATRTLS 285
           VV  + GL++G +  +   +    F G+P+A+PPIG  RFR+P  ++PW GV +AT   +
Sbjct: 39  VVETTSGLVRG-FPRTVLDKEVHVFYGIPFAKPPIGPLRFRKPLPIEPWHGVLNATVLPN 97

Query: 286 SCLQ--YDPFVG---------TITGSENCLFVNVYTPKL---------TPTAS------- 384
           SC Q  Y+ F G             SE+CL++N++ P+          +P  +       
Sbjct: 98  SCYQERYEYFPGFPGEEMWNPNTNISEDCLYLNIWVPQKYRLRHKGDGSPGGNGGPRNGL 157

Query: 385 LPVMVFIHGGAFMYGEG--GFYDAGNL-MDRDMVVVTLNYRLGPLGFL-----XTGDEVA 540
           LP++V+I+GG FM G      Y+A  +    ++++ ++ YR+G  GFL      T  E A
Sbjct: 158 LPLLVWIYGGGFMSGTATLDVYNADIMAATSNVIIASMQYRVGAFGFLYLNKHFTNSEEA 217

Query: 541 PGNNGLKDQ 567
           PGN GL DQ
Sbjct: 218 PGNMGLWDQ 226


>AB181702-1|BAE06051.1|  628|Apis mellifera acetylcholinesterase
           protein.
          Length = 628

 Score = 87.0 bits (206), Expect = 1e-19
 Identities = 63/189 (33%), Positives = 99/189 (52%), Gaps = 35/189 (18%)
 Frame = +1

Query: 106 VVRVSQGLIQGSWKVSTKGRPYASFQGVPYARPPIGKYRFREPQQLKPWTGVWDATRTLS 285
           VV  + GL++G +  +   +    F G+P+A+PPIG  RFR+P  ++PW GV +AT   +
Sbjct: 39  VVETTSGLVRG-FPRTVLDKEVHVFYGIPFAKPPIGPLRFRKPLPIEPWHGVLNATVLPN 97

Query: 286 SCLQ--YDPFVG---------TITGSENCLFVNVYTPKL---------TPTAS------- 384
           SC Q  Y+ F G             SE+CL++N++ P+          +P  +       
Sbjct: 98  SCYQERYEYFPGFPGEEMWNPNTNISEDCLYLNIWVPQKYRLRHKGDGSPGGNGGPRNGL 157

Query: 385 LPVMVFIHGGAFMYGEG--GFYDAGNL-MDRDMVVVTLNYRLGPLGFL-----XTGDEVA 540
           LP++V+I+GG FM G      Y+A  +    ++++ ++ YR+G  GFL      T  E A
Sbjct: 158 LPLLVWIYGGGFMSGTATLDVYNADIMAATSNVIIASMQYRVGAFGFLYLNKHFTNSEEA 217

Query: 541 PGNNGLKDQ 567
           PGN GL DQ
Sbjct: 218 PGNMGLWDQ 226


>AY526235-1|AAS20468.1|  169|Apis mellifera esterase protein.
          Length = 169

 Score = 65.3 bits (152), Expect = 4e-13
 Identities = 32/51 (62%), Positives = 35/51 (68%)
 Frame = +1

Query: 415 AFMYGEGGFYDAGNLMDRDMVVVTLNYRLGPLGFLXTGDEVAPGNNGLKDQ 567
           AF  G G    A  LMD D++ VT+NYRLG LGFL T DEV PGN GLKDQ
Sbjct: 3   AFQLGSGTPMGAKYLMDSDVIFVTINYRLGILGFLSTEDEVVPGNMGLKDQ 53


>AF213011-1|AAG43567.1|   62|Apis mellifera esterase A2 protein.
          Length = 62

 Score = 54.4 bits (125), Expect = 8e-10
 Identities = 27/64 (42%), Positives = 42/64 (65%), Gaps = 2/64 (3%)
 Frame = +1

Query: 328 SENCLFVNVYTPKLTPTASLPVMVFIHGGAFMYGEGGFYD--AGNLMDRDMVVVTLNYRL 501
           +E+CL+++VYT  L    S PVM ++H GAF+ G   F++     L+ +D+VVV+ NYR+
Sbjct: 1   TEDCLYLDVYTNSLDQ--SKPVMFYVHEGAFISGTSSFHEMRPDYLLPKDVVVVSSNYRV 58

Query: 502 GPLG 513
           G  G
Sbjct: 59  GAFG 62


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 24.2 bits (50), Expect = 0.92
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 159 LSGNLPAALYKPLGHPHYRVETLSGRRNHHG 67
           L  N+P   Y  L HPH+R     G+  H G
Sbjct: 30  LGWNVPPE-YSDLVHPHWRAFPAPGKHFHIG 59


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -3

Query: 504 SQSIIQRDDHHIPVHQI 454
           +QS++Q +  H P HQI
Sbjct: 907 AQSLLQSNQQHFPHHQI 923


>AB167961-1|BAD51404.1|  554|Apis mellifera E74 protein.
          Length = 554

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 11/35 (31%), Positives = 16/35 (45%)
 Frame = -3

Query: 417 GPAMDENHNRKRGRWSQLGCVHIHEQTILTTSYSS 313
           GP M   H+    +   L  +H  +   L+ SYSS
Sbjct: 344 GPTMGPPHHHHHHQTQSLQHLHYRQPPTLSESYSS 378


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 23.4 bits (48), Expect = 1.6
 Identities = 9/23 (39%), Positives = 11/23 (47%)
 Frame = -3

Query: 429 TVHEGPAMDENHNRKRGRWSQLG 361
           T+H G A    H +   RW Q G
Sbjct: 154 TLHHGMAYHRGHRKDYERWVQQG 176


>DQ435338-1|ABD92653.1|  135|Apis mellifera OBP21 protein.
          Length = 135

 Score = 23.0 bits (47), Expect = 2.1
 Identities = 11/31 (35%), Positives = 15/31 (48%)
 Frame = -1

Query: 404 MKTITGREAVGVSLGVYTFTNRQFSLPVIVP 312
           MKTI    A+ V +G  T    Q  L  ++P
Sbjct: 1   MKTIVIISAICVCVGALTLEELQIGLRAVIP 31


>AF388659-3|AAK71993.1|  548|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform C protein.
          Length = 548

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 252 DWSLGCHEDSFLV 290
           +W +G HED +L+
Sbjct: 518 EWKVGNHEDGYLI 530


>AF388659-2|AAK71994.1|  463|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform B protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 252 DWSLGCHEDSFLV 290
           +W +G HED +L+
Sbjct: 433 EWKVGNHEDGYLI 445


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 2.8
 Identities = 6/13 (46%), Positives = 10/13 (76%)
 Frame = +3

Query: 252 DWSLGCHEDSFLV 290
           +W +G HED +L+
Sbjct: 752 EWKVGNHEDGYLI 764


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 185 EFPTQGHQLESIDLGNPNS*SLGL 256
           +FP  GH L+  DL   +  S GL
Sbjct: 325 KFPGMGHGLQPPDLAGTSQGSAGL 348


>DQ435335-1|ABD92650.1|  135|Apis mellifera OBP18 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 6.5
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = -1

Query: 404 MKTITGREAVGVSLGVYTFTNRQFSLPVIVP 312
           MKT     A+ V +G  T    Q  L  +VP
Sbjct: 1   MKTFVIISAICVCVGALTLEEFQIGLRAVVP 31


>EF540769-1|ABQ14707.1|  620|Apis mellifera adenosine deaminase
           protein.
          Length = 620

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = -1

Query: 557 KPLLPGATSSPVXRKPRGPNL*FNVT 480
           KPL+   TSS V +  + PN   N T
Sbjct: 498 KPLMSLITSSEVRQPGKAPNYSVNWT 523


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 7/25 (28%), Positives = 14/25 (56%)
 Frame = +1

Query: 229 EPQQLKPWTGVWDATRTLSSCLQYD 303
           EP     ++G+W     +SS ++Y+
Sbjct: 93  EPDSKVTYSGLWRVCVAISSRMEYE 117


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 21.0 bits (42), Expect = 8.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = -3

Query: 333 LTTSYSSDEWIVL*TRGKSPRGIPNSSPR 247
           + T Y SDE I+  +  +  +  PNS+ R
Sbjct: 561 VATMYGSDEEIINSSNDEGGKTSPNSAVR 589


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 186,864
Number of Sequences: 438
Number of extensions: 4781
Number of successful extensions: 35
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16381902
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)