Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28m24
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces po...    28   0.85 
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   1.5  
SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor Fep1|Sc...    27   2.0  
SPBC83.01 |ucp8||UBA/EH/EF hand domain protein Ucp8|Schizosaccha...    26   3.4  
SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces ...    26   3.4  
SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces p...    26   3.4  
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz...    25   6.0  
SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr 1|||...    25   7.9  
SPBC30D10.10c |tor1||phosphatidylinositol kinase Tor1|Schizosacc...    25   7.9  

>SPAC3C7.08c |elf1||AAA family ATPase ELf1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1057

 Score = 27.9 bits (59), Expect = 0.85
 Identities = 16/51 (31%), Positives = 26/51 (50%)
 Frame = +3

Query: 153 QRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSAL 305
           Q  +   N+E Q   S  ++L   + KN  +   E+   +IDY+CD  +AL
Sbjct: 333 QAAKAANNSEKQALDSACKELREAVLKNTSVPH-ELANSIIDYVCDALAAL 382


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 16/53 (30%), Positives = 24/53 (45%)
 Frame = -2

Query: 250  LEIFLFLGMKGTRSWSFERYICISAFSPSRCRCTRPLAIAGTEAPVAHTAVIA 92
            L  FL  G +G    ++   ICI      +C+   P+ +AG E  +   A IA
Sbjct: 1297 LHEFLVQGYQGVDMHTYHNIICILIEKAEKCK-DEPVILAGIEDNITLIAEIA 1348


>SPAC23E2.01 |fep1|gaf2|iron-sensing transcription factor
           Fep1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 564

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 15/35 (42%), Positives = 18/35 (51%)
 Frame = +2

Query: 374 AAAPPSEETARPSPYAQHHPPQITLHTRTXKSNGT 478
           ++ P S ET + SP      PQI   T T  SNGT
Sbjct: 115 SSVPSSTET-KASPTPLESKPQIVSDTTTETSNGT 148


>SPBC83.01 |ucp8||UBA/EH/EF hand domain protein
           Ucp8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 884

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +2

Query: 350 SVATLRSVAAAPPSEETARPSPYAQHHPP 436
           S A    V  APP   T  P+P  +HHPP
Sbjct: 720 SPAIKPQVTPAPP---TPAPTPAVKHHPP 745


>SPAC8C9.14 |prr1||transcription factor Prr1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 539

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1

Query: 319 LLDNLTLKAP*RRHLAQRRRSP 384
           LLDN+  KAP +R+LA    +P
Sbjct: 102 LLDNIKRKAPSKRNLANENTAP 123


>SPAC2E1P3.01 |||zinc binding dehydrogenase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 348

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 14/37 (37%), Positives = 20/37 (54%)
 Frame = +3

Query: 126 VPAIASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKN 236
           + A  SG      DG NA  + Y++   +LV F+PKN
Sbjct: 77  IGATVSGWAPGPLDGSNAAWREYITLDVNLVYFVPKN 113


>SPBC354.05c |sre2||membrane-tethered transcription factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 222 FMPKNRKISKLEVIQHVIDYICDLQS 299
           ++P +RK++K  ++    +YI  LQS
Sbjct: 472 YVPLSRKLNKATILSKATEYIKSLQS 497


>SPAC328.02 |||Ariadne homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 504

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/16 (68%), Positives = 11/16 (68%)
 Frame = +2

Query: 266 ACYRLYLRPSISVGES 313
           ACYR YL   IS GES
Sbjct: 154 ACYRQYLDSRISEGES 169


>SPBC30D10.10c |tor1||phosphatidylinositol kinase
            Tor1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2335

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 15/53 (28%), Positives = 25/53 (47%), Gaps = 2/53 (3%)
 Frame = +3

Query: 141  SGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEV--IQHVIDYICDL 293
            SG++     G+  E+ M+  K  + +PF      I+ +EV  IQ      C+L
Sbjct: 2149 SGKIIHIDFGDCFEVAMHREKFPEKIPFRLTRMLINAMEVSGIQGTYKITCEL 2201


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,699,752
Number of Sequences: 5004
Number of extensions: 27260
Number of successful extensions: 88
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)