Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28m24
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop heli...    34   0.047
U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neur...    31   0.58 
AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical pr...    27   5.4  
AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein...    27   5.4  
AC084158-30|AAK68574.1|  184|Caenorhabditis elegans Neurogenin p...    27   7.1  
U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell l...    27   9.4  
U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell l...    27   9.4  

>U51999-7|AAA96089.1|   89|Caenorhabditis elegans Helix loop helix
           protein 15 protein.
          Length = 89

 Score = 34.3 bits (75), Expect = 0.047
 Identities = 15/40 (37%), Positives = 27/40 (67%)
 Frame = +3

Query: 189 MYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALE 308
           M  S+L+ L+P +P  +K+SK+E+++  I YI  L + L+
Sbjct: 50  MAFSQLRALLPTLPVEKKLSKIEILRFSIAYISFLDNLLQ 89


>U10402-7|AAA19069.1|  192|Caenorhabditis elegans C. elegans neuro d
           homolog protein1 protein.
          Length = 192

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 17/59 (28%), Positives = 33/59 (55%)
 Frame = +3

Query: 138 ASGRVQRHRDGENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSALENH 314
           A+GR +    G N  + M    L++ +P   +++K+SK+E ++   +YI  LQ  L+ +
Sbjct: 24  ANGRERARMHGLNNALDM----LREYIPITTQHQKLSKIETLRLARNYIDALQRMLQTN 78


>AL117204-4|CAB55144.1|  281|Caenorhabditis elegans Hypothetical
           protein Y116A8C.11 protein.
          Length = 281

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 14/32 (43%), Positives = 22/32 (68%), Gaps = 1/32 (3%)
 Frame = +3

Query: 243 ISKLEVIQHVID-YICDLQSALENHPAVGQFD 335
           +S+LEV +  +D  + DLQS LE +P + +FD
Sbjct: 209 LSQLEVQKRKLDKQLIDLQSKLERNPELVEFD 240


>Z83217-5|CAB05684.2| 1565|Caenorhabditis elegans Hypothetical protein
            C10C6.1 protein.
          Length = 1565

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 368  SVAAAPPSEETARPSPYAQHHPPQITLHTRTXKSNGT 478
            SV++A  S +   P P   HH   +T H  +  S+ T
Sbjct: 1128 SVSSASSSNDVGSPHPLPLHHEHPLTSHDSSAASSST 1164


>AM086627-1|CAJ31105.1| 1565|Caenorhabditis elegans KIN-4 protein
            protein.
          Length = 1565

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +2

Query: 368  SVAAAPPSEETARPSPYAQHHPPQITLHTRTXKSNGT 478
            SV++A  S +   P P   HH   +T H  +  S+ T
Sbjct: 1128 SVSSASSSNDVGSPHPLPLHHEHPLTSHDSSAASSST 1164


>AC084158-30|AAK68574.1|  184|Caenorhabditis elegans Neurogenin
           protein 1 protein.
          Length = 184

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 11/37 (29%), Positives = 21/37 (56%)
 Frame = +3

Query: 195 LSKLQDLVPFMPKNRKISKLEVIQHVIDYICDLQSAL 305
           L  L+ ++P +P   K++K+E ++   +YI  L   L
Sbjct: 82  LEHLRGILPALPDEPKMTKIETLRKAQEYIASLSFQL 118


>U80838-2|AAL02517.1|  297|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform a protein.
          Length = 297

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 347 LSVATLRSVAAAPPSEETARPSPYAQ 424
           ++ A +R VA+APP+  T  P  Y Q
Sbjct: 81  VATAQIRKVASAPPTTSTDPPLSYTQ 106


>U80838-1|AAU05570.1|  597|Caenorhabditis elegans Abnormal cell
           lineage protein 42,isoform b protein.
          Length = 597

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +2

Query: 347 LSVATLRSVAAAPPSEETARPSPYAQ 424
           ++ A +R VA+APP+  T  P  Y Q
Sbjct: 381 VATAQIRKVASAPPTTSTDPPLSYTQ 406


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,609,215
Number of Sequences: 27780
Number of extensions: 164468
Number of successful extensions: 487
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 461
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 485
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)