Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28m24
         (482 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate isome...    21   5.2  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   6.9  
AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecul...    21   6.9  
AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor ...    21   6.9  
AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member A...    21   6.9  
AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protei...    21   9.1  

>EF493864-1|ABP65286.1|  247|Apis mellifera triosephoshpate
           isomerase protein.
          Length = 247

 Score = 21.4 bits (43), Expect = 5.2
 Identities = 14/53 (26%), Positives = 28/53 (52%), Gaps = 1/53 (1%)
 Frame = +3

Query: 168 GENAEIQMYLSKLQDLVPFMPKNRKISKLEVIQHVID-YICDLQSALENHPAV 323
           G N ++    S++ D+V F+ K    S +EV+  V   Y+   ++ L N+ ++
Sbjct: 8   GGNWKMNGTKSEINDIVGFLKKGPLDSNVEVVVGVPSIYLTYAKNILPNNISI 60


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 9/37 (24%), Positives = 18/37 (48%)
 Frame = +2

Query: 365 RSVAAAPPSEETARPSPYAQHHPPQITLHTRTXKSNG 475
           ++ AA   ++E     P  Q+ PP++    ++   NG
Sbjct: 133 KTFAAREDNDEEEAQKPKEQYIPPELPNDEKSLFENG 169


>AB269871-1|BAF03050.1| 1923|Apis mellifera cell adhesion molecule
            AbsCAM-Ig7B protein.
          Length = 1923

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +2

Query: 272  YRLYLRPSISVGESPSCWTI*R*RRLSVATLRSVAAAPPSEETARPS 412
            Y+LYL     +G SPS         LSV T       PP+     P+
Sbjct: 1471 YQLYLTSHNKIGSSPSSPV------LSVRTQGQAPGIPPAATFLSPN 1511


>AB267886-1|BAF46356.1|  567|Apis mellifera ecdysteroid receptor A
           isoform protein.
          Length = 567

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 11/37 (29%), Positives = 17/37 (45%)
 Frame = +3

Query: 93  AITAVCATGASVPAIASGRVQRHRDGENAEIQMYLSK 203
           A+T     G    +I    V + + G N EI MY+ +
Sbjct: 201 ALTCEGCKGFFRRSITKNAVYQCKYGNNCEIDMYMRR 237


>AB257298-1|BAE93381.1| 1919|Apis mellifera Dscam family member
            AbsCAM-Ig7A protein.
          Length = 1919

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +2

Query: 272  YRLYLRPSISVGESPSCWTI*R*RRLSVATLRSVAAAPPSEETARPS 412
            Y+LYL     +G SPS         LSV T       PP+     P+
Sbjct: 1467 YQLYLTSHNKIGSSPSSPV------LSVRTQGQAPGIPPAATFLSPN 1507


>AF469010-1|AAL93136.1|  678|Apis mellifera cGMP-dependent protein
           kinase foraging protein.
          Length = 678

 Score = 20.6 bits (41), Expect = 9.1
 Identities = 10/37 (27%), Positives = 14/37 (37%)
 Frame = +2

Query: 68  SCSVTQDESDNSSVXXXXXXXXXXXXSSAATPGWRKR 178
           SC V   E+ N  +            SS++  GW  R
Sbjct: 313 SCLVIDRETFNQLISSLDEIRTRYKDSSSSVEGWENR 349


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,870
Number of Sequences: 438
Number of extensions: 1869
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)