Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmmt28m22
         (453 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   1.3  
SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1 ...    27   1.8  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   3.1  
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb...    25   4.1  
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc...    25   5.4  
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|...    25   7.2  
SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein Ug...    24   9.5  
SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|...    24   9.5  
SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces...    24   9.5  

>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 27.1 bits (57), Expect = 1.3
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 4/43 (9%)
 Frame = +3

Query: 210 YDDKNYKLTEDPNMKNPLITNH----SPYGYVLKIMNSIDSQN 326
           +  +  +LT+ PN    L+T+H    S Y Y LK+    DS+N
Sbjct: 33  FSKREAQLTDTPNK---LLTDHDQSASDYAYALKLQQLFDSEN 72


>SPBC17D11.04c |||histone acetyltransferase complex subunit Nto1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 767

 Score = 26.6 bits (56), Expect = 1.8
 Identities = 14/43 (32%), Positives = 23/43 (53%)
 Frame = +3

Query: 234 TEDPNMKNPLITNHSPYGYVLKIMNSIDSQNVGVVEAQNEIMN 362
           T+   +++ L+T  S   YVLK + +   +NV  V  Q E +N
Sbjct: 50  TQYAGLRDSLVTYKSENSYVLKALLNAKIENVKPVGVQTENIN 92


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.8 bits (54), Expect = 3.1
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +2

Query: 92  EATTGAGAGYPSDNRPRAGEATGRASLRDIRAGPDRAERLRR 217
           +A+  A   YP+   P    A  R +LRD  A P+    LR+
Sbjct: 530 KASGEAPYSYPAPPVPSVNNAGARLTLRDSGAAPEATYSLRQ 571


>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1207

 Score = 25.4 bits (53), Expect = 4.1
 Identities = 17/67 (25%), Positives = 30/67 (44%), Gaps = 2/67 (2%)
 Frame = +3

Query: 135 DHEQVKLLAER--LYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKIMN 308
           D+EQV  L +   L G +++   +  GY +   +  EDP+ +  L          L++  
Sbjct: 614 DYEQVLHLIQNSNLVGQAIIAYLQKKGYPEIALQFVEDPSTRFELALECGNLETALELAR 673

Query: 309 SIDSQNV 329
           +ID   V
Sbjct: 674 TIDRPEV 680


>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 935

 Score = 25.0 bits (52), Expect = 5.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +3

Query: 135 DHEQVKLLAERLYGISVLDLTELNGYDDKNYKLTEDPNMKNPLITN 272
           D+E+ K    +  G  + DL+ L+     NY+L ++PN++N    N
Sbjct: 184 DNEKDKTKESKAKGF-LDDLSGLSASSLHNYQLLKNPNVRNSTTQN 228


>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
           subunit|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1752

 Score = 24.6 bits (51), Expect = 7.2
 Identities = 9/24 (37%), Positives = 17/24 (70%)
 Frame = +3

Query: 78  NMTDAKLLLEPGQVIRPIIDHEQV 149
           N TD+ +L+E G++I  ++D + V
Sbjct: 605 NPTDSGMLIENGEIIYGVVDKKTV 628


>SPAC1B2.02c |ugo1||mitochondrial fusion and transport protein
           Ugo1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 421

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 13/33 (39%), Positives = 16/33 (48%)
 Frame = -3

Query: 160 ASSFTCSWSIIGRITCPGSSSSFASVILPVNFR 62
           A  F C  S+I    C  S   F S +LP+ FR
Sbjct: 281 ALPFYCPSSLILPTVCYVSLPPFVSSVLPLTFR 313


>SPAC9E9.09c |||aldehyde dehydrogenase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 503

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 10/27 (37%), Positives = 15/27 (55%)
 Frame = +3

Query: 207 GYDDKNYKLTEDPNMKNPLITNHSPYG 287
           G+ DK+Y  T + ++K    T H P G
Sbjct: 136 GWADKDYGQTIETDIKRFAYTRHEPIG 162


>SPBC3H7.03c |||2-oxoglutarate dehydrogenase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1009

 Score = 24.2 bits (50), Expect = 9.5
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +3

Query: 183 VLDLTELNGYDDKNYKLTEDPNMKNPLITNHSPYGYVLKIMNS 311
           V D+ E +    KNYK      + NP +   SP   + KI+ S
Sbjct: 555 VWDILESSFESSKNYKSDHREWLSNPWVGFASPKDLMTKILPS 597


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,652,886
Number of Sequences: 5004
Number of extensions: 28399
Number of successful extensions: 104
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 104
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 168258430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)